Hb_017711_010

Information

Type -
Description -
Location Contig17711: 291-611
Sequence    

Annotation

kegg
ID rcu:RCOM_0542340
description hypothetical protein
nr
ID XP_012085235.1
description PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
swissprot
ID Q9FNC9
description Mitochondrial import receptor subunit TOM9-2 OS=Arabidopsis thaliana GN=TOM9-2 PE=1 SV=3
trembl
ID A0A067K3T4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17632 PE=4 SV=1
Gene Ontology
ID GO:0005741
description mitochondrial import receptor subunit tom9-2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17009: 264-827 , PASA_asmbl_17010: 609-2226
cDNA
(Sanger)
(ID:Location)		 007_H20.ab1: 264-827

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017711_010 0.0 - - PREDICTED: mitochondrial import receptor subunit TOM9-2 [Jatropha curcas]
2 Hb_005224_050 0.0688506741 - - PREDICTED: uncharacterized protein LOC105632350 [Jatropha curcas]
3 Hb_002293_030 0.0855164442 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
4 Hb_000193_350 0.0942908225 - - eukaryotic translation initiation factor 5A isoform VI [Hevea brasiliensis]
5 Hb_000175_400 0.0970124341 - - conserved hypothetical protein [Ricinus communis]
6 Hb_003058_220 0.1106440612 - - Pre-mRNA branch site protein p14, putative [Ricinus communis]
7 Hb_000009_040 0.1129085513 - - -
8 Hb_001104_120 0.1136552723 - - -
9 Hb_000189_530 0.115742285 - - 40S ribosomal protein S24B [Hevea brasiliensis]
10 Hb_000563_590 0.1179343622 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
11 Hb_025193_050 0.1179530412 - - PREDICTED: uncharacterized protein LOC105647290 isoform X1 [Jatropha curcas]
12 Hb_008847_020 0.118544432 - - 40S ribosomal protein S17C [Hevea brasiliensis]
13 Hb_000089_130 0.1205298588 - - mitochondrial ribosomal protein S16, putative [Ricinus communis]
14 Hb_011161_040 0.1214900073 - - PREDICTED: uncharacterized protein LOC105638905 isoform X2 [Jatropha curcas]
15 Hb_004410_010 0.1215878074 - - PREDICTED: probable 1-acylglycerol-3-phosphate O-acyltransferase [Jatropha curcas]
16 Hb_011139_020 0.1221402899 - - Mitochondrial import receptor subunit TOM7-1, putative [Ricinus communis]
17 Hb_000199_070 0.1255090073 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011310_060 0.1263193788 - - PREDICTED: uncharacterized protein At2g34160-like [Jatropha curcas]
19 Hb_003687_020 0.1289026081 - - PREDICTED: 60S ribosomal protein L14-1 [Jatropha curcas]
20 Hb_000152_430 0.1289227509 - - PREDICTED: 40S ribosomal protein S20-1 [Jatropha curcas]

Gene co-expression network

sample Hb_017711_010 Hb_017711_010 Hb_005224_050 Hb_005224_050 Hb_017711_010--Hb_005224_050 Hb_002293_030 Hb_002293_030 Hb_017711_010--Hb_002293_030 Hb_000193_350 Hb_000193_350 Hb_017711_010--Hb_000193_350 Hb_000175_400 Hb_000175_400 Hb_017711_010--Hb_000175_400 Hb_003058_220 Hb_003058_220 Hb_017711_010--Hb_003058_220 Hb_000009_040 Hb_000009_040 Hb_017711_010--Hb_000009_040 Hb_005224_050--Hb_003058_220 Hb_005224_050--Hb_000193_350 Hb_000199_070 Hb_000199_070 Hb_005224_050--Hb_000199_070 Hb_003687_020 Hb_003687_020 Hb_005224_050--Hb_003687_020 Hb_005224_050--Hb_002293_030 Hb_011310_060 Hb_011310_060 Hb_002293_030--Hb_011310_060 Hb_008847_020 Hb_008847_020 Hb_002293_030--Hb_008847_020 Hb_002234_210 Hb_002234_210 Hb_002293_030--Hb_002234_210 Hb_000526_150 Hb_000526_150 Hb_002293_030--Hb_000526_150 Hb_000634_050 Hb_000634_050 Hb_002293_030--Hb_000634_050 Hb_000193_350--Hb_000175_400 Hb_000193_350--Hb_003687_020 Hb_000189_530 Hb_000189_530 Hb_000193_350--Hb_000189_530 Hb_011016_090 Hb_011016_090 Hb_000193_350--Hb_011016_090 Hb_002259_030 Hb_002259_030 Hb_000175_400--Hb_002259_030 Hb_004453_150 Hb_004453_150 Hb_000175_400--Hb_004453_150 Hb_025193_050 Hb_025193_050 Hb_000175_400--Hb_025193_050 Hb_000175_400--Hb_011016_090 Hb_000089_130 Hb_000089_130 Hb_000175_400--Hb_000089_130 Hb_003058_220--Hb_000199_070 Hb_002701_050 Hb_002701_050 Hb_003058_220--Hb_002701_050 Hb_000419_130 Hb_000419_130 Hb_003058_220--Hb_000419_130 Hb_001247_350 Hb_001247_350 Hb_003058_220--Hb_001247_350 Hb_000645_190 Hb_000645_190 Hb_003058_220--Hb_000645_190 Hb_001587_060 Hb_001587_060 Hb_000009_040--Hb_001587_060 Hb_000236_460 Hb_000236_460 Hb_000009_040--Hb_000236_460 Hb_000009_040--Hb_003058_220 Hb_000009_040--Hb_005224_050 Hb_000009_040--Hb_002293_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
94.8695 12.5833 11.3043 39.976 96.699 225.057
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
200.031 317.464 85.2143 32.8836 4.40227

CAGE analysis