Hb_017862_010

Information

Type -
Description -
Location Contig17862: 4494-6970
Sequence    

Annotation

kegg
ID pop:POPTR_0012s04280g
description POPTRDRAFT_728715; Signal recognition particle 19 kDa family protein
nr
ID XP_012084174.1
description PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
swissprot
ID P49964
description Signal recognition particle 19 kDa protein OS=Oryza sativa subsp. japonica GN=SRP19 PE=1 SV=1
trembl
ID A0A067JVS4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19072 PE=4 SV=1
Gene Ontology
ID GO:0048500
description signal recognition particle 19 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17166: 4511-6888
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017862_010 0.0 - - PREDICTED: signal recognition particle 19 kDa protein-like [Jatropha curcas]
2 Hb_002603_150 0.0758017643 - - PREDICTED: protein yippee-like [Jatropha curcas]
3 Hb_000069_100 0.0758041093 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001123_120 0.0843546043 - - Uncharacterized protein TCM_042776 [Theobroma cacao]
5 Hb_000212_260 0.0865649489 - - acyl-carrier-protein [Triadica sebifera]
6 Hb_006831_030 0.0882102489 - - PREDICTED: ras-related protein RABB1c [Fragaria vesca subsp. vesca]
7 Hb_000224_090 0.0892982466 - - Eukaryotic translation initiation factor 1A [Gossypium arboreum]
8 Hb_002835_320 0.090090303 - - 60S ribosomal protein L27B [Hevea brasiliensis]
9 Hb_005590_020 0.0902636664 - - hypothetical protein CICLE_v10010008mg [Citrus clementina]
10 Hb_001545_060 0.0912826978 - - PREDICTED: uncharacterized protein LOC105643880 [Jatropha curcas]
11 Hb_003043_120 0.0916004463 - - conserved hypothetical protein [Ricinus communis]
12 Hb_148930_010 0.0947430073 - - PREDICTED: uncharacterized protein LOC105648400 [Jatropha curcas]
13 Hb_003376_130 0.0948428263 transcription factor TF Family: S1Fa-like DNA-binding protein S1FA, putative [Ricinus communis]
14 Hb_005841_050 0.095933304 - - PREDICTED: F-box protein SKIP1-like [Jatropha curcas]
15 Hb_000805_130 0.0984179107 - - conserved hypothetical protein [Ricinus communis]
16 Hb_004041_040 0.098581599 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM14-1 [Camelina sativa]
17 Hb_011245_020 0.0986342345 - - Ferrochelatase [Medicago truncatula]
18 Hb_002097_060 0.1001413715 - - PREDICTED: 50S ribosomal protein L9, chloroplastic-like isoform X1 [Jatropha curcas]
19 Hb_000272_070 0.10030494 - - snare protein YKt [Hevea brasiliensis]
20 Hb_000163_130 0.1008917949 - - hypothetical protein CICLE_v10022870mg [Citrus clementina]

Gene co-expression network

sample Hb_017862_010 Hb_017862_010 Hb_002603_150 Hb_002603_150 Hb_017862_010--Hb_002603_150 Hb_000069_100 Hb_000069_100 Hb_017862_010--Hb_000069_100 Hb_001123_120 Hb_001123_120 Hb_017862_010--Hb_001123_120 Hb_000212_260 Hb_000212_260 Hb_017862_010--Hb_000212_260 Hb_006831_030 Hb_006831_030 Hb_017862_010--Hb_006831_030 Hb_000224_090 Hb_000224_090 Hb_017862_010--Hb_000224_090 Hb_002603_150--Hb_000069_100 Hb_000012_100 Hb_000012_100 Hb_002603_150--Hb_000012_100 Hb_000069_550 Hb_000069_550 Hb_002603_150--Hb_000069_550 Hb_003053_030 Hb_003053_030 Hb_002603_150--Hb_003053_030 Hb_001687_040 Hb_001687_040 Hb_002603_150--Hb_001687_040 Hb_002097_060 Hb_002097_060 Hb_000069_100--Hb_002097_060 Hb_000069_100--Hb_006831_030 Hb_000329_330 Hb_000329_330 Hb_000069_100--Hb_000329_330 Hb_001616_060 Hb_001616_060 Hb_000069_100--Hb_001616_060 Hb_000069_100--Hb_000212_260 Hb_006573_220 Hb_006573_220 Hb_000069_100--Hb_006573_220 Hb_000085_330 Hb_000085_330 Hb_001123_120--Hb_000085_330 Hb_148930_010 Hb_148930_010 Hb_001123_120--Hb_148930_010 Hb_010172_030 Hb_010172_030 Hb_001123_120--Hb_010172_030 Hb_000236_460 Hb_000236_460 Hb_001123_120--Hb_000236_460 Hb_002781_020 Hb_002781_020 Hb_001123_120--Hb_002781_020 Hb_003376_130 Hb_003376_130 Hb_000212_260--Hb_003376_130 Hb_001912_010 Hb_001912_010 Hb_000212_260--Hb_001912_010 Hb_000648_060 Hb_000648_060 Hb_000212_260--Hb_000648_060 Hb_000212_260--Hb_010172_030 Hb_009851_100 Hb_009851_100 Hb_000212_260--Hb_009851_100 Hb_000398_160 Hb_000398_160 Hb_006831_030--Hb_000398_160 Hb_011245_020 Hb_011245_020 Hb_006831_030--Hb_011245_020 Hb_001935_030 Hb_001935_030 Hb_006831_030--Hb_001935_030 Hb_001268_080 Hb_001268_080 Hb_006831_030--Hb_001268_080 Hb_001006_180 Hb_001006_180 Hb_006831_030--Hb_001006_180 Hb_000236_150 Hb_000236_150 Hb_000224_090--Hb_000236_150 Hb_000224_090--Hb_003053_030 Hb_000224_090--Hb_000069_100 Hb_000163_130 Hb_000163_130 Hb_000224_090--Hb_000163_130 Hb_000722_040 Hb_000722_040 Hb_000224_090--Hb_000722_040 Hb_012539_020 Hb_012539_020 Hb_000224_090--Hb_012539_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
37.218 5.94979 11.1972 19.0379 29.0931 33.7165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
103.62 169.893 89.4728 24.5077 11.3396

CAGE analysis