Hb_017862_020

Information

Type -
Description -
Location Contig17862: 8378-21842
Sequence    

Annotation

kegg
ID rcu:RCOM_1002950
description neurobeachin, putative
nr
ID XP_012084177.1
description PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
swissprot
ID Q55FJ0
description Probable inactive serine/threonine-protein kinase lvsG OS=Dictyostelium discoideum GN=lvsG PE=3 SV=1
trembl
ID B9RZY6
description Neurobeachin, putative OS=Ricinus communis GN=RCOM_1002950 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable inactive serine threonine-protein kinase lvsg

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17167: 8774-9831 , PASA_asmbl_17170: 10893-11721 , PASA_asmbl_17171: 11722-20904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017862_020 0.0 - - PREDICTED: probable inactive serine/threonine-protein kinase lvsG [Jatropha curcas]
2 Hb_002784_020 0.0530172722 - - PREDICTED: probable protein arginine N-methyltransferase 3 [Jatropha curcas]
3 Hb_000207_180 0.0604029049 - - PREDICTED: calponin homology domain-containing protein DDB_G0272472 [Jatropha curcas]
4 Hb_002686_030 0.0614148612 - - PREDICTED: uncharacterized protein LOC105632635 isoform X1 [Jatropha curcas]
5 Hb_000225_040 0.0642129672 - - PREDICTED: translation factor GUF1 homolog, mitochondrial [Nelumbo nucifera]
6 Hb_000395_130 0.0646041723 - - PREDICTED: N6-adenosine-methyltransferase MT-A70-like [Jatropha curcas]
7 Hb_000579_230 0.0654612861 - - PREDICTED: bifunctional nuclease 1 [Jatropha curcas]
8 Hb_000347_070 0.0660594411 - - conserved hypothetical protein [Ricinus communis]
9 Hb_002375_010 0.0662381976 - - PREDICTED: C2 and GRAM domain-containing protein At1g03370 isoform X1 [Jatropha curcas]
10 Hb_000441_120 0.0667683279 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
11 Hb_000696_230 0.0681726354 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
12 Hb_004954_070 0.0696187218 - - PREDICTED: uncharacterized protein LOC105645187 [Jatropha curcas]
13 Hb_104061_020 0.0700737225 - - PREDICTED: UV-stimulated scaffold protein A homolog [Jatropha curcas]
14 Hb_000390_320 0.0706344477 transcription factor TF Family: HSF PREDICTED: heat stress transcription factor A-1b-like [Jatropha curcas]
15 Hb_009270_020 0.0712767468 - - PREDICTED: LOW QUALITY PROTEIN: helicase and polymerase-containing protein TEBICHI [Jatropha curcas]
16 Hb_000617_180 0.0716059041 - - hypothetical protein B456_013G125900 [Gossypium raimondii]
17 Hb_167498_010 0.0727069982 - - PREDICTED: WPP domain-interacting protein 1-like [Jatropha curcas]
18 Hb_003158_010 0.0735903229 - - hypothetical protein JCGZ_17361 [Jatropha curcas]
19 Hb_001341_170 0.073624621 - - PREDICTED: general transcription factor IIH subunit 2 [Jatropha curcas]
20 Hb_001550_060 0.0736840175 - - PREDICTED: serine/threonine-protein phosphatase BSL3 isoform X4 [Jatropha curcas]

Gene co-expression network

sample Hb_017862_020 Hb_017862_020 Hb_002784_020 Hb_002784_020 Hb_017862_020--Hb_002784_020 Hb_000207_180 Hb_000207_180 Hb_017862_020--Hb_000207_180 Hb_002686_030 Hb_002686_030 Hb_017862_020--Hb_002686_030 Hb_000225_040 Hb_000225_040 Hb_017862_020--Hb_000225_040 Hb_000395_130 Hb_000395_130 Hb_017862_020--Hb_000395_130 Hb_000579_230 Hb_000579_230 Hb_017862_020--Hb_000579_230 Hb_164544_010 Hb_164544_010 Hb_002784_020--Hb_164544_010 Hb_002375_010 Hb_002375_010 Hb_002784_020--Hb_002375_010 Hb_000696_230 Hb_000696_230 Hb_002784_020--Hb_000696_230 Hb_000617_180 Hb_000617_180 Hb_002784_020--Hb_000617_180 Hb_028872_090 Hb_028872_090 Hb_002784_020--Hb_028872_090 Hb_009270_020 Hb_009270_020 Hb_000207_180--Hb_009270_020 Hb_000441_120 Hb_000441_120 Hb_000207_180--Hb_000441_120 Hb_000347_070 Hb_000347_070 Hb_000207_180--Hb_000347_070 Hb_006420_040 Hb_006420_040 Hb_000207_180--Hb_006420_040 Hb_000731_270 Hb_000731_270 Hb_000207_180--Hb_000731_270 Hb_000556_160 Hb_000556_160 Hb_002686_030--Hb_000556_160 Hb_000538_270 Hb_000538_270 Hb_002686_030--Hb_000538_270 Hb_000289_060 Hb_000289_060 Hb_002686_030--Hb_000289_060 Hb_007163_120 Hb_007163_120 Hb_002686_030--Hb_007163_120 Hb_002499_040 Hb_002499_040 Hb_002686_030--Hb_002499_040 Hb_000011_200 Hb_000011_200 Hb_000225_040--Hb_000011_200 Hb_003158_010 Hb_003158_010 Hb_000225_040--Hb_003158_010 Hb_167498_010 Hb_167498_010 Hb_000225_040--Hb_167498_010 Hb_010618_010 Hb_010618_010 Hb_000225_040--Hb_010618_010 Hb_000193_190 Hb_000193_190 Hb_000225_040--Hb_000193_190 Hb_000329_470 Hb_000329_470 Hb_000225_040--Hb_000329_470 Hb_000092_020 Hb_000092_020 Hb_000395_130--Hb_000092_020 Hb_001080_230 Hb_001080_230 Hb_000395_130--Hb_001080_230 Hb_000003_190 Hb_000003_190 Hb_000395_130--Hb_000003_190 Hb_000395_130--Hb_000441_120 Hb_000395_130--Hb_006420_040 Hb_012779_090 Hb_012779_090 Hb_000395_130--Hb_012779_090 Hb_012395_140 Hb_012395_140 Hb_000579_230--Hb_012395_140 Hb_002815_030 Hb_002815_030 Hb_000579_230--Hb_002815_030 Hb_000395_070 Hb_000395_070 Hb_000579_230--Hb_000395_070 Hb_104061_020 Hb_104061_020 Hb_000579_230--Hb_104061_020 Hb_000579_230--Hb_009270_020 Hb_004676_010 Hb_004676_010 Hb_000579_230--Hb_004676_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.62569 9.97945 6.28803 5.74631 10.2153 10.5947
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.15395 8.1114 8.54726 12.7827 7.28664

CAGE analysis