Hb_017862_030

Information

Type -
Description -
Location Contig17862: 22611-23257
Sequence    

Annotation

kegg
ID rcu:RCOM_1003060
description nucleic acid binding protein, putative
nr
ID XP_012092730.1
description PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JL75
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08633 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017862_030 0.0 - - PREDICTED: proteasome assembly chaperone 4 [Jatropha curcas]
2 Hb_043630_030 0.0686391535 - - leucine-rich repeat transmembrane protein kinase [Populus trichocarpa]
3 Hb_122951_010 0.0724190256 - - PREDICTED: uncharacterized protein LOC105639235 [Jatropha curcas]
4 Hb_000045_080 0.0775657414 - - amino acid transporter, putative [Ricinus communis]
5 Hb_008598_010 0.0855964322 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At1g61370 [Jatropha curcas]
6 Hb_002151_020 0.0935503041 - - PREDICTED: uncharacterized protein LOC105637945 [Jatropha curcas]
7 Hb_026144_040 0.0947879438 - - -
8 Hb_001405_170 0.0963182978 - - aspartyl protease family protein [Populus trichocarpa]
9 Hb_002053_190 0.0988829104 transcription factor TF Family: G2-like PREDICTED: uncharacterized protein LOC105639296 isoform X1 [Jatropha curcas]
10 Hb_002902_040 0.1074564236 - - PREDICTED: peroxidase 51 [Jatropha curcas]
11 Hb_000384_020 0.1080595785 - - sucrose phosphate syntase, putative [Ricinus communis]
12 Hb_009771_040 0.1093578412 - - hypothetical protein JCGZ_25039 [Jatropha curcas]
13 Hb_000020_210 0.1096032628 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
14 Hb_002960_030 0.1132683136 - - hypothetical protein POPTR_0002s02190g [Populus trichocarpa]
15 Hb_001427_100 0.1157026126 - - acc synthase, putative [Ricinus communis]
16 Hb_002168_070 0.1179872414 - - Jasmonate O-methyltransferase, putative [Ricinus communis]
17 Hb_007221_040 0.1184020923 - - PREDICTED: probable receptor-like protein kinase At5g24010 isoform X2 [Populus euphratica]
18 Hb_000849_030 0.1191398986 - - PREDICTED: fimbrin-2 [Jatropha curcas]
19 Hb_000162_070 0.121531943 - - phospholipase C, putative [Ricinus communis]
20 Hb_001339_030 0.1221689684 transcription factor TF Family: zf-HD PREDICTED: zinc-finger homeodomain protein 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_017862_030 Hb_017862_030 Hb_043630_030 Hb_043630_030 Hb_017862_030--Hb_043630_030 Hb_122951_010 Hb_122951_010 Hb_017862_030--Hb_122951_010 Hb_000045_080 Hb_000045_080 Hb_017862_030--Hb_000045_080 Hb_008598_010 Hb_008598_010 Hb_017862_030--Hb_008598_010 Hb_002151_020 Hb_002151_020 Hb_017862_030--Hb_002151_020 Hb_026144_040 Hb_026144_040 Hb_017862_030--Hb_026144_040 Hb_043630_030--Hb_122951_010 Hb_001427_100 Hb_001427_100 Hb_043630_030--Hb_001427_100 Hb_000020_210 Hb_000020_210 Hb_043630_030--Hb_000020_210 Hb_003054_070 Hb_003054_070 Hb_043630_030--Hb_003054_070 Hb_007221_040 Hb_007221_040 Hb_043630_030--Hb_007221_040 Hb_002522_040 Hb_002522_040 Hb_122951_010--Hb_002522_040 Hb_005111_020 Hb_005111_020 Hb_122951_010--Hb_005111_020 Hb_000849_030 Hb_000849_030 Hb_122951_010--Hb_000849_030 Hb_122951_010--Hb_000020_210 Hb_000045_080--Hb_008598_010 Hb_000045_080--Hb_026144_040 Hb_000162_070 Hb_000162_070 Hb_000045_080--Hb_000162_070 Hb_000045_080--Hb_002151_020 Hb_000384_020 Hb_000384_020 Hb_000045_080--Hb_000384_020 Hb_008598_010--Hb_026144_040 Hb_008598_010--Hb_002151_020 Hb_144703_010 Hb_144703_010 Hb_008598_010--Hb_144703_010 Hb_008598_010--Hb_000162_070 Hb_000069_540 Hb_000069_540 Hb_008598_010--Hb_000069_540 Hb_002902_040 Hb_002902_040 Hb_002151_020--Hb_002902_040 Hb_001269_400 Hb_001269_400 Hb_002151_020--Hb_001269_400 Hb_019496_040 Hb_019496_040 Hb_002151_020--Hb_019496_040 Hb_000473_100 Hb_000473_100 Hb_002151_020--Hb_000473_100 Hb_007237_080 Hb_007237_080 Hb_026144_040--Hb_007237_080 Hb_026144_040--Hb_000162_070 Hb_002598_020 Hb_002598_020 Hb_026144_040--Hb_002598_020 Hb_026144_040--Hb_002151_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.768215 0.741944 2.12391 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.245254 0.953616

CAGE analysis