Hb_017895_010

Information

Type transcription factor
Description TF Family: FAR1
Location Contig17895: 3882-5990
Sequence    

Annotation

kegg
ID pmum:103319921
description protein FAR1-RELATED SEQUENCE 5-like
nr
ID XP_008219733.1
description PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
swissprot
ID Q9SZL8
description Protein FAR1-RELATED SEQUENCE 5 OS=Arabidopsis thaliana GN=FRS5 PE=2 SV=1
trembl
ID M5X3A3
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014831mg PE=4 SV=1
Gene Ontology
ID GO:0006355
description protein far1-related sequence 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17240: 6982-22963
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_010 0.0 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 5-like [Prunus mume]
2 Hb_000907_040 0.1339533849 - - ankyrin repeat-containing protein, putative [Ricinus communis]
3 Hb_001278_080 0.2033079757 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
4 Hb_101393_010 0.2207156005 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001032_030 0.2340363769 - - PREDICTED: 60S ribosomal protein L23a-like [Eucalyptus grandis]
6 Hb_000053_050 0.2818983682 - - hypothetical protein F775_01878 [Aegilops tauschii]
7 Hb_002204_040 0.2857600189 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
8 Hb_002023_040 0.288402889 - - -
9 Hb_004907_040 0.2960568776 - - hypothetical protein POPTR_0011s079751g, partial [Populus trichocarpa]
10 Hb_094437_010 0.3098766644 - - -
11 Hb_081815_010 0.3125265809 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
12 Hb_012150_050 0.3212415921 - - protein binding protein, putative [Ricinus communis]
13 Hb_027402_030 0.3308859087 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
14 Hb_002368_090 0.3327151168 - - PREDICTED: cationic peroxidase 1-like [Populus euphratica]
15 Hb_000671_040 0.3376459551 - - -
16 Hb_131621_010 0.3387407042 - - hypothetical protein MIMGU_mgv1a004274mg [Erythranthe guttata]
17 Hb_122741_010 0.3388390651 - - hypothetical protein JCGZ_02014 [Jatropha curcas]
18 Hb_001486_110 0.3394749096 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor RAP2-11-like [Jatropha curcas]
19 Hb_007765_090 0.3407214576 - - unknown [Glycine max]
20 Hb_043999_010 0.3409359999 - - PREDICTED: uncharacterized protein LOC105629587 [Jatropha curcas]

Gene co-expression network

sample Hb_017895_010 Hb_017895_010 Hb_000907_040 Hb_000907_040 Hb_017895_010--Hb_000907_040 Hb_001278_080 Hb_001278_080 Hb_017895_010--Hb_001278_080 Hb_101393_010 Hb_101393_010 Hb_017895_010--Hb_101393_010 Hb_001032_030 Hb_001032_030 Hb_017895_010--Hb_001032_030 Hb_000053_050 Hb_000053_050 Hb_017895_010--Hb_000053_050 Hb_002204_040 Hb_002204_040 Hb_017895_010--Hb_002204_040 Hb_000907_040--Hb_101393_010 Hb_000907_040--Hb_001032_030 Hb_000907_040--Hb_001278_080 Hb_002023_040 Hb_002023_040 Hb_000907_040--Hb_002023_040 Hb_012150_050 Hb_012150_050 Hb_000907_040--Hb_012150_050 Hb_001278_080--Hb_002023_040 Hb_021068_030 Hb_021068_030 Hb_001278_080--Hb_021068_030 Hb_001278_080--Hb_000053_050 Hb_002368_090 Hb_002368_090 Hb_001278_080--Hb_002368_090 Hb_001278_080--Hb_002204_040 Hb_000089_230 Hb_000089_230 Hb_101393_010--Hb_000089_230 Hb_003384_050 Hb_003384_050 Hb_101393_010--Hb_003384_050 Hb_000290_010 Hb_000290_010 Hb_101393_010--Hb_000290_010 Hb_002805_080 Hb_002805_080 Hb_101393_010--Hb_002805_080 Hb_115045_010 Hb_115045_010 Hb_001032_030--Hb_115045_010 Hb_011781_040 Hb_011781_040 Hb_001032_030--Hb_011781_040 Hb_002540_040 Hb_002540_040 Hb_001032_030--Hb_002540_040 Hb_094437_010 Hb_094437_010 Hb_001032_030--Hb_094437_010 Hb_000053_050--Hb_002368_090 Hb_046120_010 Hb_046120_010 Hb_000053_050--Hb_046120_010 Hb_000053_050--Hb_002023_040 Hb_000082_020 Hb_000082_020 Hb_000053_050--Hb_000082_020 Hb_041025_010 Hb_041025_010 Hb_000053_050--Hb_041025_010 Hb_000291_130 Hb_000291_130 Hb_002204_040--Hb_000291_130 Hb_005839_010 Hb_005839_010 Hb_002204_040--Hb_005839_010 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_001385_080 Hb_001385_080 Hb_002204_040--Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_002204_040--Hb_122567_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0118397 0.0118817 0 0.0326145
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis