Hb_017895_020

Information

Type -
Description -
Location Contig17895: 6943-24804
Sequence    

Annotation

kegg
ID rcu:RCOM_0594070
description Vacuolar protein sorting protein, putative
nr
ID XP_002532537.1
description Vacuolar protein sorting protein, putative [Ricinus communis]
swissprot
ID Q0WQF4
description Vacuolar protein sorting-associated protein 53 A OS=Arabidopsis thaliana GN=VPS53 PE=1 SV=1
trembl
ID B9T2R8
description Vacuolar protein sorting protein, putative OS=Ricinus communis GN=RCOM_0594070 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17240: 6982-22963 , PASA_asmbl_17242: 20401-20558 , PASA_asmbl_17243: 18647-18966 , PASA_asmbl_17244: 23529-24706
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_020 0.0 - - Vacuolar protein sorting protein, putative [Ricinus communis]
2 Hb_002675_040 0.052133169 - - ran-binding protein, putative [Ricinus communis]
3 Hb_000329_130 0.0531297769 - - beta-tubulin cofactor d, putative [Ricinus communis]
4 Hb_001900_120 0.0538848603 - - PREDICTED: uncharacterized protein LOC105632666 [Jatropha curcas]
5 Hb_008725_130 0.0567583674 - - PREDICTED: importin subunit alpha-like [Jatropha curcas]
6 Hb_028872_120 0.0719247505 - - PREDICTED: cyclin-dependent kinase G-2 [Jatropha curcas]
7 Hb_000914_080 0.0741723062 - - ubiquitin-protein ligase, putative [Ricinus communis]
8 Hb_147737_010 0.0753740692 - - PREDICTED: arginine/serine-rich coiled-coil protein 2 isoform X2 [Jatropha curcas]
9 Hb_000025_650 0.0760822662 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
10 Hb_000120_620 0.0780031883 - - PREDICTED: serine/threonine-protein kinase/endoribonuclease IRE1a isoform X1 [Jatropha curcas]
11 Hb_005892_030 0.0789765715 - - PREDICTED: splicing factor U2af large subunit A [Jatropha curcas]
12 Hb_033594_020 0.0793447605 - - PREDICTED: ruvB-like 2 [Jatropha curcas]
13 Hb_000343_210 0.079831861 - - ran-binding protein, putative [Ricinus communis]
14 Hb_010315_090 0.0799100528 - - suppressor of ty, putative [Ricinus communis]
15 Hb_000347_570 0.0811684224 - - PREDICTED: transcription initiation factor TFIID subunit 12b isoform X1 [Jatropha curcas]
16 Hb_004970_160 0.0812021303 - - PREDICTED: THO complex subunit 5B-like isoform X2 [Jatropha curcas]
17 Hb_011609_170 0.0821341746 - - PREDICTED: T-complex protein 1 subunit zeta 1 [Jatropha curcas]
18 Hb_000035_040 0.0824192056 transcription factor TF Family: PHD PREDICTED: CHD3-type chromatin-remodeling factor PICKLE isoform X1 [Jatropha curcas]
19 Hb_001178_150 0.0847100982 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
20 Hb_009151_020 0.0849097465 - - PREDICTED: DNA polymerase delta catalytic subunit [Jatropha curcas]

Gene co-expression network

sample Hb_017895_020 Hb_017895_020 Hb_002675_040 Hb_002675_040 Hb_017895_020--Hb_002675_040 Hb_000329_130 Hb_000329_130 Hb_017895_020--Hb_000329_130 Hb_001900_120 Hb_001900_120 Hb_017895_020--Hb_001900_120 Hb_008725_130 Hb_008725_130 Hb_017895_020--Hb_008725_130 Hb_028872_120 Hb_028872_120 Hb_017895_020--Hb_028872_120 Hb_000914_080 Hb_000914_080 Hb_017895_020--Hb_000914_080 Hb_033594_020 Hb_033594_020 Hb_002675_040--Hb_033594_020 Hb_000343_210 Hb_000343_210 Hb_002675_040--Hb_000343_210 Hb_002675_040--Hb_001900_120 Hb_002675_040--Hb_000329_130 Hb_002675_040--Hb_008725_130 Hb_147737_010 Hb_147737_010 Hb_000329_130--Hb_147737_010 Hb_010315_090 Hb_010315_090 Hb_000329_130--Hb_010315_090 Hb_140049_020 Hb_140049_020 Hb_000329_130--Hb_140049_020 Hb_007558_120 Hb_007558_120 Hb_000329_130--Hb_007558_120 Hb_009151_020 Hb_009151_020 Hb_000329_130--Hb_009151_020 Hb_001900_120--Hb_000329_130 Hb_001050_010 Hb_001050_010 Hb_001900_120--Hb_001050_010 Hb_011609_170 Hb_011609_170 Hb_001900_120--Hb_011609_170 Hb_001900_120--Hb_008725_130 Hb_008725_130--Hb_011609_170 Hb_008725_130--Hb_000329_130 Hb_005408_020 Hb_005408_020 Hb_008725_130--Hb_005408_020 Hb_007943_120 Hb_007943_120 Hb_028872_120--Hb_007943_120 Hb_028872_120--Hb_000329_130 Hb_002301_270 Hb_002301_270 Hb_028872_120--Hb_002301_270 Hb_001178_150 Hb_001178_150 Hb_028872_120--Hb_001178_150 Hb_028872_120--Hb_010315_090 Hb_002888_070 Hb_002888_070 Hb_000914_080--Hb_002888_070 Hb_000914_080--Hb_000329_130 Hb_003126_100 Hb_003126_100 Hb_000914_080--Hb_003126_100 Hb_000914_080--Hb_009151_020 Hb_000914_080--Hb_005408_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
50.36 26.7295 21.6761 14.8436 50.3386 47.8929
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.5097 9.04825 11.4666 18.4249 18.1511

CAGE analysis