Hb_017895_030

Information

Type transcription factor
Description TF Family: C2H2
Location Contig17895: 26295-26971
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_030 0.0 transcription factor TF Family: C2H2 -
2 Hb_003680_070 0.1437356542 - - PREDICTED: protein CHUP1, chloroplastic [Jatropha curcas]
3 Hb_001754_010 0.1673882525 - - translationally controlled tumor protein [Hevea brasiliensis]
4 Hb_001008_010 0.1714179839 - - PREDICTED: 30S ribosomal protein S17, chloroplastic-like [Populus euphratica]
5 Hb_010344_040 0.1714788763 - - PREDICTED: uncharacterized protein LOC105636452 [Jatropha curcas]
6 Hb_000333_090 0.1716301214 - - PREDICTED: uncharacterized protein LOC102617374 isoform X1 [Citrus sinensis]
7 Hb_000310_030 0.172446777 - - hypothetical protein JCGZ_03883 [Jatropha curcas]
8 Hb_001481_180 0.1730811207 - - plasma membrane H+-ATPase [Hevea brasiliensis]
9 Hb_003349_070 0.1748896909 - - PREDICTED: signal recognition particle 14 kDa protein [Gossypium raimondii]
10 Hb_010710_020 0.1780693944 - - PREDICTED: uncharacterized protein LOC103322096 [Prunus mume]
11 Hb_030954_020 0.1791529844 - - hypothetical protein RCOM_1330200 [Ricinus communis]
12 Hb_002781_020 0.1796451684 - - PREDICTED: uncharacterized protein LOC105644398 isoform X2 [Jatropha curcas]
13 Hb_075653_020 0.1804292918 - - -
14 Hb_000479_180 0.1819586876 - - conserved hypothetical protein [Ricinus communis]
15 Hb_006745_060 0.1822739909 - - -
16 Hb_000193_200 0.1823327525 - - rotamase, putative [Ricinus communis]
17 Hb_002805_290 0.1826776177 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
18 Hb_001723_080 0.1830447011 - - hypothetical protein L484_026139 [Morus notabilis]
19 Hb_001999_120 0.1856644139 - - PREDICTED: pleckstrin homology domain-containing protein 1 [Jatropha curcas]
20 Hb_000300_400 0.1863000816 - - hypothetical protein PHAVU_001G114100g [Phaseolus vulgaris]

Gene co-expression network

sample Hb_017895_030 Hb_017895_030 Hb_003680_070 Hb_003680_070 Hb_017895_030--Hb_003680_070 Hb_001754_010 Hb_001754_010 Hb_017895_030--Hb_001754_010 Hb_001008_010 Hb_001008_010 Hb_017895_030--Hb_001008_010 Hb_010344_040 Hb_010344_040 Hb_017895_030--Hb_010344_040 Hb_000333_090 Hb_000333_090 Hb_017895_030--Hb_000333_090 Hb_000310_030 Hb_000310_030 Hb_017895_030--Hb_000310_030 Hb_000261_460 Hb_000261_460 Hb_003680_070--Hb_000261_460 Hb_001538_100 Hb_001538_100 Hb_003680_070--Hb_001538_100 Hb_010172_030 Hb_010172_030 Hb_003680_070--Hb_010172_030 Hb_000865_070 Hb_000865_070 Hb_003680_070--Hb_000865_070 Hb_002781_020 Hb_002781_020 Hb_003680_070--Hb_002781_020 Hb_003680_070--Hb_001754_010 Hb_001629_100 Hb_001629_100 Hb_001754_010--Hb_001629_100 Hb_000120_590 Hb_000120_590 Hb_001754_010--Hb_000120_590 Hb_100777_010 Hb_100777_010 Hb_001754_010--Hb_100777_010 Hb_130291_010 Hb_130291_010 Hb_001754_010--Hb_130291_010 Hb_001754_010--Hb_000333_090 Hb_001754_010--Hb_010172_030 Hb_001008_010--Hb_001629_100 Hb_001173_040 Hb_001173_040 Hb_001008_010--Hb_001173_040 Hb_012265_010 Hb_012265_010 Hb_001008_010--Hb_012265_010 Hb_001008_010--Hb_010172_030 Hb_002539_090 Hb_002539_090 Hb_001008_010--Hb_002539_090 Hb_001008_010--Hb_001754_010 Hb_010344_040--Hb_000333_090 Hb_010344_040--Hb_010172_030 Hb_000567_170 Hb_000567_170 Hb_010344_040--Hb_000567_170 Hb_001912_010 Hb_001912_010 Hb_010344_040--Hb_001912_010 Hb_002214_050 Hb_002214_050 Hb_010344_040--Hb_002214_050 Hb_000922_270 Hb_000922_270 Hb_010344_040--Hb_000922_270 Hb_084849_020 Hb_084849_020 Hb_000333_090--Hb_084849_020 Hb_000333_090--Hb_010172_030 Hb_001369_050 Hb_001369_050 Hb_000333_090--Hb_001369_050 Hb_000362_210 Hb_000362_210 Hb_000333_090--Hb_000362_210 Hb_000333_090--Hb_002214_050 Hb_000333_090--Hb_100777_010 Hb_000032_040 Hb_000032_040 Hb_000310_030--Hb_000032_040 Hb_000733_030 Hb_000733_030 Hb_000310_030--Hb_000733_030 Hb_000310_030--Hb_000567_170 Hb_000563_560 Hb_000563_560 Hb_000310_030--Hb_000563_560 Hb_000310_030--Hb_010344_040 Hb_002119_120 Hb_002119_120 Hb_000310_030--Hb_002119_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.241415 0.0446151 0 0.0424673 0.207682 0.467303
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.5184 0.79555 0.417316 0.228399 0.153917

CAGE analysis