Hb_017895_040

Information

Type -
Description -
Location Contig17895: 30775-42619
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08120g
description POPTRDRAFT_819142; Vacuolar protein sorting 26
nr
ID XP_002308142.1
description hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
swissprot
ID Q9FJD0
description Vacuolar protein sorting-associated protein 26A OS=Arabidopsis thaliana GN=VPS26A PE=2 SV=1
trembl
ID A9PCL0
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08120g PE=2 SV=1
Gene Ontology
ID GO:0005794
description vacuolar protein sorting-associated protein 26b

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17245: 30827-42500 , PASA_asmbl_17246: 30859-31021
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_040 0.0 - - hypothetical protein POPTR_0006s08120g [Populus trichocarpa]
2 Hb_000375_350 0.0435725784 - - PREDICTED: uncharacterized protein LOC105641632 [Jatropha curcas]
3 Hb_003582_060 0.0577297942 transcription factor TF Family: BBR-BPC PREDICTED: protein BASIC PENTACYSTEINE2-like isoform X1 [Jatropha curcas]
4 Hb_005496_140 0.060596415 - - conserved hypothetical protein [Ricinus communis]
5 Hb_024439_010 0.062607857 - - PREDICTED: LAG1 longevity assurance homolog 2 [Jatropha curcas]
6 Hb_013575_010 0.0635880336 - - Hepatocyte growth factor-regulated tyrosine kinase substrate, putative [Ricinus communis]
7 Hb_002641_060 0.0641869022 - - prefoldin subunit, putative [Ricinus communis]
8 Hb_154948_040 0.0668690012 - - hypothetical protein B456_013G043800 [Gossypium raimondii]
9 Hb_000599_250 0.0707385096 - - hypothetical protein POPTR_0002s03730g [Populus trichocarpa]
10 Hb_000390_300 0.0710001406 transcription factor TF Family: GNAT PREDICTED: histone acetyltransferase MCC1 [Jatropha curcas]
11 Hb_001278_100 0.0710096094 - - PREDICTED: probable phosphopantothenoylcysteine decarboxylase [Jatropha curcas]
12 Hb_161574_020 0.0712433681 - - PREDICTED: ubiquitin fusion degradation protein 1 homolog [Jatropha curcas]
13 Hb_000221_190 0.0712718377 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
14 Hb_001300_150 0.0724873311 transcription factor TF Family: TUB PREDICTED: tubby-like F-box protein 3 [Jatropha curcas]
15 Hb_007878_010 0.0737529882 - - PREDICTED: DNA-directed RNA polymerases IV and V subunit 4 [Jatropha curcas]
16 Hb_001931_010 0.0741231099 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
17 Hb_003057_060 0.0759452364 - - conserved hypothetical protein [Ricinus communis]
18 Hb_008071_020 0.0759542965 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
19 Hb_006615_240 0.0760175568 - - PREDICTED: uncharacterized protein LOC105640673 [Jatropha curcas]
20 Hb_000566_120 0.0764452656 - - PREDICTED: uncharacterized protein LOC105123035 isoform X1 [Populus euphratica]

Gene co-expression network

sample Hb_017895_040 Hb_017895_040 Hb_000375_350 Hb_000375_350 Hb_017895_040--Hb_000375_350 Hb_003582_060 Hb_003582_060 Hb_017895_040--Hb_003582_060 Hb_005496_140 Hb_005496_140 Hb_017895_040--Hb_005496_140 Hb_024439_010 Hb_024439_010 Hb_017895_040--Hb_024439_010 Hb_013575_010 Hb_013575_010 Hb_017895_040--Hb_013575_010 Hb_002641_060 Hb_002641_060 Hb_017895_040--Hb_002641_060 Hb_001300_150 Hb_001300_150 Hb_000375_350--Hb_001300_150 Hb_000599_250 Hb_000599_250 Hb_000375_350--Hb_000599_250 Hb_000375_350--Hb_005496_140 Hb_000375_350--Hb_002641_060 Hb_000375_350--Hb_013575_010 Hb_006615_240 Hb_006615_240 Hb_003582_060--Hb_006615_240 Hb_000003_230 Hb_000003_230 Hb_003582_060--Hb_000003_230 Hb_003304_020 Hb_003304_020 Hb_003582_060--Hb_003304_020 Hb_000221_190 Hb_000221_190 Hb_003582_060--Hb_000221_190 Hb_003582_060--Hb_001300_150 Hb_002863_050 Hb_002863_050 Hb_005496_140--Hb_002863_050 Hb_002235_250 Hb_002235_250 Hb_005496_140--Hb_002235_250 Hb_001252_130 Hb_001252_130 Hb_005496_140--Hb_001252_130 Hb_003416_010 Hb_003416_010 Hb_005496_140--Hb_003416_010 Hb_000390_300 Hb_000390_300 Hb_024439_010--Hb_000390_300 Hb_004058_030 Hb_004058_030 Hb_024439_010--Hb_004058_030 Hb_004102_110 Hb_004102_110 Hb_024439_010--Hb_004102_110 Hb_024439_010--Hb_005496_140 Hb_004696_080 Hb_004696_080 Hb_024439_010--Hb_004696_080 Hb_003057_060 Hb_003057_060 Hb_013575_010--Hb_003057_060 Hb_013575_010--Hb_002641_060 Hb_000260_350 Hb_000260_350 Hb_013575_010--Hb_000260_350 Hb_000666_100 Hb_000666_100 Hb_013575_010--Hb_000666_100 Hb_002681_100 Hb_002681_100 Hb_013575_010--Hb_002681_100 Hb_007878_010 Hb_007878_010 Hb_002641_060--Hb_007878_010 Hb_008616_050 Hb_008616_050 Hb_002641_060--Hb_008616_050 Hb_008847_030 Hb_008847_030 Hb_002641_060--Hb_008847_030 Hb_002641_060--Hb_003416_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
12.7306 9.43225 16.6516 21.4479 10.357 12.4457
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.6313 24.9293 17.0618 9.3046 12.4679

CAGE analysis