Hb_017895_060

Information

Type -
Description -
Location Contig17895: 48186-49881
Sequence    

Annotation

kegg
ID pop:POPTR_0015s01040g
description POPTRDRAFT_824509; rhodanese-like domain-containing family protein
nr
ID XP_012084646.1
description PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Jatropha curcas]
swissprot
ID Q94A65
description Rhodanese-like domain-containing protein 14, chloroplastic OS=Arabidopsis thaliana GN=At4g27700 PE=2 SV=1
trembl
ID A0A067K691
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_20825 PE=4 SV=1
Gene Ontology
ID GO:0009534
description rhodanese-like domain-containing protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17250: 48306-49904
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017895_060 0.0 - - PREDICTED: rhodanese-like domain-containing protein 14, chloroplastic [Jatropha curcas]
2 Hb_082655_010 0.1362403541 - - rhodanese-like domain-containing family protein [Populus trichocarpa]
3 Hb_004689_040 0.1548912237 - - PREDICTED: uncharacterized protein LOC105648084 [Jatropha curcas]
4 Hb_000108_250 0.1709535881 - - PREDICTED: protochlorophyllide-dependent translocon component 52, chloroplastic-like isoform X1 [Jatropha curcas]
5 Hb_000991_020 0.1725289129 - - amino acid transporter, putative [Ricinus communis]
6 Hb_003948_020 0.172645847 - - PREDICTED: transmembrane protein 41B [Jatropha curcas]
7 Hb_000120_990 0.1738421675 - - PREDICTED: MATE efflux family protein 3, chloroplastic-like [Jatropha curcas]
8 Hb_003664_030 0.1768860273 - - PREDICTED: mitochondrial carnitine/acylcarnitine carrier-like protein [Jatropha curcas]
9 Hb_003209_010 0.1771581176 - - hypothetical protein POPTR_0010s16880g [Populus trichocarpa]
10 Hb_000368_120 0.1777576424 - - PREDICTED: uncharacterized protein LOC105633862 [Jatropha curcas]
11 Hb_000175_050 0.189457833 - - -
12 Hb_005563_040 0.1898300924 - - PREDICTED: uncharacterized protein LOC105630105 isoform X1 [Jatropha curcas]
13 Hb_011114_020 0.1908511331 - - PREDICTED: 50S ribosomal protein L12-1, chloroplastic-like [Jatropha curcas]
14 Hb_002411_100 0.1910896581 - - PREDICTED: uncharacterized protein LOC105631266 [Jatropha curcas]
15 Hb_000922_340 0.1921253763 - - PREDICTED: uncharacterized protein LOC105640368 [Jatropha curcas]
16 Hb_000684_200 0.1943052013 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000122_260 0.1946663955 transcription factor TF Family: SNF2 PREDICTED: SNF2 domain-containing protein CLASSY 1-like [Jatropha curcas]
18 Hb_169209_010 0.1964494059 - - PREDICTED: porphobilinogen deaminase, chloroplastic [Jatropha curcas]
19 Hb_000046_480 0.196569007 - - PREDICTED: acyl-CoA-binding domain-containing protein 5 [Jatropha curcas]
20 Hb_004236_040 0.1973197335 - - biotin carboxyl carrier protein [Vernicia fordii]

Gene co-expression network

sample Hb_017895_060 Hb_017895_060 Hb_082655_010 Hb_082655_010 Hb_017895_060--Hb_082655_010 Hb_004689_040 Hb_004689_040 Hb_017895_060--Hb_004689_040 Hb_000108_250 Hb_000108_250 Hb_017895_060--Hb_000108_250 Hb_000991_020 Hb_000991_020 Hb_017895_060--Hb_000991_020 Hb_003948_020 Hb_003948_020 Hb_017895_060--Hb_003948_020 Hb_000120_990 Hb_000120_990 Hb_017895_060--Hb_000120_990 Hb_002045_090 Hb_002045_090 Hb_082655_010--Hb_002045_090 Hb_000958_120 Hb_000958_120 Hb_082655_010--Hb_000958_120 Hb_005694_050 Hb_005694_050 Hb_082655_010--Hb_005694_050 Hb_005074_050 Hb_005074_050 Hb_082655_010--Hb_005074_050 Hb_009545_070 Hb_009545_070 Hb_082655_010--Hb_009545_070 Hb_004689_040--Hb_000991_020 Hb_001405_090 Hb_001405_090 Hb_004689_040--Hb_001405_090 Hb_019837_040 Hb_019837_040 Hb_004689_040--Hb_019837_040 Hb_169209_010 Hb_169209_010 Hb_004689_040--Hb_169209_010 Hb_009178_070 Hb_009178_070 Hb_004689_040--Hb_009178_070 Hb_000122_260 Hb_000122_260 Hb_000108_250--Hb_000122_260 Hb_010098_040 Hb_010098_040 Hb_000108_250--Hb_010098_040 Hb_004837_100 Hb_004837_100 Hb_000108_250--Hb_004837_100 Hb_000684_200 Hb_000684_200 Hb_000108_250--Hb_000684_200 Hb_002636_030 Hb_002636_030 Hb_000108_250--Hb_002636_030 Hb_000803_170 Hb_000803_170 Hb_000108_250--Hb_000803_170 Hb_000032_140 Hb_000032_140 Hb_000991_020--Hb_000032_140 Hb_000395_010 Hb_000395_010 Hb_000991_020--Hb_000395_010 Hb_000175_050 Hb_000175_050 Hb_000991_020--Hb_000175_050 Hb_000042_290 Hb_000042_290 Hb_000991_020--Hb_000042_290 Hb_000991_020--Hb_169209_010 Hb_001124_180 Hb_001124_180 Hb_000991_020--Hb_001124_180 Hb_002411_100 Hb_002411_100 Hb_003948_020--Hb_002411_100 Hb_000045_050 Hb_000045_050 Hb_003948_020--Hb_000045_050 Hb_003664_030 Hb_003664_030 Hb_003948_020--Hb_003664_030 Hb_010557_010 Hb_010557_010 Hb_003948_020--Hb_010557_010 Hb_000061_250 Hb_000061_250 Hb_003948_020--Hb_000061_250 Hb_000264_280 Hb_000264_280 Hb_003948_020--Hb_000264_280 Hb_000397_150 Hb_000397_150 Hb_000120_990--Hb_000397_150 Hb_009288_040 Hb_009288_040 Hb_000120_990--Hb_009288_040 Hb_000922_340 Hb_000922_340 Hb_000120_990--Hb_000922_340 Hb_000680_010 Hb_000680_010 Hb_000120_990--Hb_000680_010 Hb_001269_500 Hb_001269_500 Hb_000120_990--Hb_001269_500 Hb_003994_080 Hb_003994_080 Hb_000120_990--Hb_003994_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.0814 9.02225 42.664 18.8656 0.94789 0.473079
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
18.3772 3.86365 7.79245 2.76379 52.1435

CAGE analysis