Hb_017904_010

Information

Type -
Description -
Location Contig17904: 30416-41680
Sequence    

Annotation

kegg
ID rcu:RCOM_1277280
description DNA repair protein reca, putative (EC:3.6.3.8)
nr
ID XP_012086240.1
description PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
swissprot
ID Q8RY99
description DNA repair protein recA homolog 2, mitochondrial OS=Arabidopsis thaliana GN=At3g10140 PE=2 SV=1
trembl
ID B9T6M8
description DNA repair protein reca, putative OS=Ricinus communis GN=RCOM_1277280 PE=3 SV=1
Gene Ontology
ID GO:0003697
description dna repair protein reca homolog mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17316: 31604-33558 , PASA_asmbl_17317: 40613-41633
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017904_010 0.0 - - PREDICTED: DNA repair protein recA homolog 2, mitochondrial [Jatropha curcas]
2 Hb_002205_070 0.0737202386 - - PREDICTED: tRNA (guanine(26)-N(2))-dimethyltransferase isoform X1 [Jatropha curcas]
3 Hb_000107_620 0.0787081198 - - PREDICTED: transcription initiation factor TFIID subunit 15 [Jatropha curcas]
4 Hb_111985_050 0.0791161481 - - uroporphyrin-III methyltransferase, putative [Ricinus communis]
5 Hb_011571_010 0.0799525802 - - Metal tolerance protein C4, putative [Ricinus communis]
6 Hb_009838_080 0.0810900218 - - Ras-GTPase-activating protein-binding protein, putative [Ricinus communis]
7 Hb_002044_080 0.0817582694 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
8 Hb_118707_030 0.0822075076 - - PREDICTED: mediator of RNA polymerase II transcription subunit 19a-like isoform X1 [Beta vulgaris subsp. vulgaris]
9 Hb_002214_040 0.083808517 - - PREDICTED: tryptophan--tRNA ligase, cytoplasmic [Jatropha curcas]
10 Hb_006502_090 0.0849003023 - - PREDICTED: mRNA turnover protein 4 homolog [Jatropha curcas]
11 Hb_012725_050 0.0856021068 transcription factor TF Family: SET set domain protein, putative [Ricinus communis]
12 Hb_001703_030 0.0857298283 transcription factor TF Family: SET Ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplast precursor, putative [Ricinus communis]
13 Hb_000046_280 0.0860443462 - - PREDICTED: uncharacterized protein LOC105631831 isoform X1 [Jatropha curcas]
14 Hb_000392_440 0.0873853181 - - PREDICTED: nuclear ribonuclease Z isoform X1 [Jatropha curcas]
15 Hb_112798_030 0.08892977 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000056_200 0.0892067281 - - 40S ribosomal S9-2 -like protein [Gossypium arboreum]
17 Hb_002963_020 0.0892388327 - - conserved hypothetical protein [Ricinus communis]
18 Hb_012799_180 0.0903790412 - - PREDICTED: probable receptor-like protein kinase At1g11050 [Vitis vinifera]
19 Hb_001821_010 0.0923468369 - - PREDICTED: uncharacterized protein C9orf78 [Jatropha curcas]
20 Hb_007632_030 0.0926336246 - - PREDICTED: poly(A)-specific ribonuclease PARN isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_017904_010 Hb_017904_010 Hb_002205_070 Hb_002205_070 Hb_017904_010--Hb_002205_070 Hb_000107_620 Hb_000107_620 Hb_017904_010--Hb_000107_620 Hb_111985_050 Hb_111985_050 Hb_017904_010--Hb_111985_050 Hb_011571_010 Hb_011571_010 Hb_017904_010--Hb_011571_010 Hb_009838_080 Hb_009838_080 Hb_017904_010--Hb_009838_080 Hb_002044_080 Hb_002044_080 Hb_017904_010--Hb_002044_080 Hb_118707_030 Hb_118707_030 Hb_002205_070--Hb_118707_030 Hb_002205_070--Hb_000107_620 Hb_002205_070--Hb_009838_080 Hb_000236_070 Hb_000236_070 Hb_002205_070--Hb_000236_070 Hb_006541_030 Hb_006541_030 Hb_002205_070--Hb_006541_030 Hb_000107_620--Hb_009838_080 Hb_000107_620--Hb_118707_030 Hb_006400_030 Hb_006400_030 Hb_000107_620--Hb_006400_030 Hb_000107_620--Hb_011571_010 Hb_002942_190 Hb_002942_190 Hb_000107_620--Hb_002942_190 Hb_007389_010 Hb_007389_010 Hb_111985_050--Hb_007389_010 Hb_003020_020 Hb_003020_020 Hb_111985_050--Hb_003020_020 Hb_009694_010 Hb_009694_010 Hb_111985_050--Hb_009694_010 Hb_001959_070 Hb_001959_070 Hb_111985_050--Hb_001959_070 Hb_004837_030 Hb_004837_030 Hb_111985_050--Hb_004837_030 Hb_007317_210 Hb_007317_210 Hb_011571_010--Hb_007317_210 Hb_112798_030 Hb_112798_030 Hb_011571_010--Hb_112798_030 Hb_006332_020 Hb_006332_020 Hb_011571_010--Hb_006332_020 Hb_001811_050 Hb_001811_050 Hb_011571_010--Hb_001811_050 Hb_011571_010--Hb_006541_030 Hb_002214_040 Hb_002214_040 Hb_009838_080--Hb_002214_040 Hb_004254_120 Hb_004254_120 Hb_009838_080--Hb_004254_120 Hb_002477_070 Hb_002477_070 Hb_009838_080--Hb_002477_070 Hb_002609_020 Hb_002609_020 Hb_009838_080--Hb_002609_020 Hb_153112_020 Hb_153112_020 Hb_009838_080--Hb_153112_020 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9639 3.25995 7.045 2.77451 10.2923 12.8463
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.4032 15.2512 10.919 4.74712 7.80427

CAGE analysis