Hb_017987_030

Information

Type -
Description -
Location Contig17987: 21799-22623
Sequence    

Annotation

kegg
ID rcu:RCOM_1585580
description hypothetical protein
nr
ID XP_012068147.1
description PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBT7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15976 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17367: 21675-23333
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_030 0.0 - - PREDICTED: uncharacterized protein LOC105630796 [Jatropha curcas]
2 Hb_002014_030 0.0791218446 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
3 Hb_012055_030 0.0896632035 - - Protein FRIGIDA, putative [Ricinus communis]
4 Hb_007192_070 0.0941742405 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
5 Hb_000110_250 0.0945878225 - - PREDICTED: homologous-pairing protein 2 homolog [Jatropha curcas]
6 Hb_000840_200 0.1046892786 - - PREDICTED: carbamoyl-phosphate synthase small chain, chloroplastic-like [Jatropha curcas]
7 Hb_000075_040 0.1051053065 - - PREDICTED: aldo-keto reductase family 4 member C9-like [Jatropha curcas]
8 Hb_189216_020 0.106181307 - - PREDICTED: translin [Jatropha curcas]
9 Hb_003678_020 0.1065609517 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000107_150 0.109541173 - - PREDICTED: 40S ribosomal protein S4-3 [Jatropha curcas]
11 Hb_005731_160 0.1102996566 - - ABC transporter family protein [Hevea brasiliensis]
12 Hb_018272_020 0.1111315581 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
13 Hb_002811_130 0.1112569119 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
14 Hb_004330_090 0.1127159273 - - PREDICTED: uncharacterized protein At1g04910-like isoform X2 [Jatropha curcas]
15 Hb_006274_030 0.1135474816 - - F-box and wd40 domain protein, putative [Ricinus communis]
16 Hb_001189_070 0.1140145741 - - PREDICTED: ribosome production factor 1 [Jatropha curcas]
17 Hb_000723_040 0.114989274 - - PREDICTED: histidine--tRNA ligase, cytoplasmic [Jatropha curcas]
18 Hb_002811_010 0.1150435306 - - cysteine synthase, putative [Ricinus communis]
19 Hb_009680_020 0.1151087838 - - PREDICTED: 40S ribosomal protein S10 [Jatropha curcas]
20 Hb_121729_010 0.1165348366 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_017987_030 Hb_017987_030 Hb_002014_030 Hb_002014_030 Hb_017987_030--Hb_002014_030 Hb_012055_030 Hb_012055_030 Hb_017987_030--Hb_012055_030 Hb_007192_070 Hb_007192_070 Hb_017987_030--Hb_007192_070 Hb_000110_250 Hb_000110_250 Hb_017987_030--Hb_000110_250 Hb_000840_200 Hb_000840_200 Hb_017987_030--Hb_000840_200 Hb_000075_040 Hb_000075_040 Hb_017987_030--Hb_000075_040 Hb_001366_180 Hb_001366_180 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_000289_110 Hb_000289_110 Hb_002014_030--Hb_000289_110 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_018272_020 Hb_018272_020 Hb_002014_030--Hb_018272_020 Hb_003292_030 Hb_003292_030 Hb_012055_030--Hb_003292_030 Hb_012055_030--Hb_000075_040 Hb_005542_130 Hb_005542_130 Hb_012055_030--Hb_005542_130 Hb_004450_040 Hb_004450_040 Hb_012055_030--Hb_004450_040 Hb_001109_050 Hb_001109_050 Hb_012055_030--Hb_001109_050 Hb_000172_580 Hb_000172_580 Hb_007192_070--Hb_000172_580 Hb_004330_090 Hb_004330_090 Hb_007192_070--Hb_004330_090 Hb_000074_080 Hb_000074_080 Hb_007192_070--Hb_000074_080 Hb_003376_230 Hb_003376_230 Hb_007192_070--Hb_003376_230 Hb_002553_060 Hb_002553_060 Hb_007192_070--Hb_002553_060 Hb_000069_720 Hb_000069_720 Hb_000110_250--Hb_000069_720 Hb_003678_020 Hb_003678_020 Hb_000110_250--Hb_003678_020 Hb_189216_020 Hb_189216_020 Hb_000110_250--Hb_189216_020 Hb_011330_020 Hb_011330_020 Hb_000110_250--Hb_011330_020 Hb_007894_060 Hb_007894_060 Hb_000110_250--Hb_007894_060 Hb_007827_010 Hb_007827_010 Hb_000110_250--Hb_007827_010 Hb_002303_020 Hb_002303_020 Hb_000840_200--Hb_002303_020 Hb_002272_270 Hb_002272_270 Hb_000840_200--Hb_002272_270 Hb_003878_090 Hb_003878_090 Hb_000840_200--Hb_003878_090 Hb_157023_020 Hb_157023_020 Hb_000840_200--Hb_157023_020 Hb_000840_200--Hb_000069_720 Hb_015675_040 Hb_015675_040 Hb_000840_200--Hb_015675_040 Hb_000075_040--Hb_004450_040 Hb_001021_150 Hb_001021_150 Hb_000075_040--Hb_001021_150 Hb_001946_400 Hb_001946_400 Hb_000075_040--Hb_001946_400 Hb_001247_310 Hb_001247_310 Hb_000075_040--Hb_001247_310 Hb_000075_040--Hb_003292_030 Hb_000075_040--Hb_002553_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.61139 2.62423 8.0138 7.44468 3.61341 8.50723
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.65933 12.1041 3.48548 7.34001 11.7143

CAGE analysis