Hb_017987_040

Information

Type transcription factor
Description TF Family: MYB
Location Contig17987: 28315-29846
Sequence    

Annotation

kegg
ID pop:POPTR_0002s11440g
description POPTRDRAFT_408761; hypothetical protein
nr
ID XP_002301137.2
description hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
swissprot
ID Q9M2Y9
description Transcription factor RAX3 OS=Arabidopsis thaliana GN=RAX3 PE=2 SV=1
trembl
ID B9GNK5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0002s11440g PE=4 SV=2
Gene Ontology
ID GO:0003677
description transcription factor rax3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_040 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0002s11440g [Populus trichocarpa]
2 Hb_005000_220 0.0920083595 - - gulonolactone oxidase, putative [Ricinus communis]
3 Hb_006198_150 0.1058200123 - - -
4 Hb_001489_030 0.1174386845 - - PREDICTED: protein NRT1/ PTR FAMILY 4.6 [Jatropha curcas]
5 Hb_008503_020 0.1180888197 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
6 Hb_007666_040 0.1198277182 - - PREDICTED: ent-kaur-16-ene synthase, chloroplastic-like [Jatropha curcas]
7 Hb_008053_070 0.1273701771 - - PREDICTED: U-box domain-containing protein 33-like isoform X4 [Jatropha curcas]
8 Hb_012053_030 0.1282192751 - - PREDICTED: GDSL esterase/lipase At5g22810 [Jatropha curcas]
9 Hb_000300_570 0.1288223486 transcription factor TF Family: MYB PREDICTED: transcription repressor MYB5-like [Jatropha curcas]
10 Hb_000322_200 0.1376817109 transcription factor TF Family: bHLH PREDICTED: putative transcription factor bHLH041 [Jatropha curcas]
11 Hb_002555_020 0.144514073 - - Receptor-like protein kinase [Medicago truncatula]
12 Hb_151364_010 0.1452319077 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
13 Hb_000265_010 0.1470217973 - - amino acid transporter, putative [Ricinus communis]
14 Hb_001952_110 0.1487936411 - - Ent-kaurene synthase B, chloroplast precursor, putative [Ricinus communis]
15 Hb_000185_060 0.1515292096 - - PREDICTED: short-chain dehydrogenase TIC 32, chloroplastic [Jatropha curcas]
16 Hb_008616_020 0.1537322221 - - unnamed protein product [Vitis vinifera]
17 Hb_002917_030 0.153914156 - - PREDICTED: LRR receptor-like serine/threonine-protein kinase HSL2 [Setaria italica]
18 Hb_001951_090 0.1579470888 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
19 Hb_011362_020 0.1585023639 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_003086_200 0.1586489048 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]

Gene co-expression network

sample Hb_017987_040 Hb_017987_040 Hb_005000_220 Hb_005000_220 Hb_017987_040--Hb_005000_220 Hb_006198_150 Hb_006198_150 Hb_017987_040--Hb_006198_150 Hb_001489_030 Hb_001489_030 Hb_017987_040--Hb_001489_030 Hb_008503_020 Hb_008503_020 Hb_017987_040--Hb_008503_020 Hb_007666_040 Hb_007666_040 Hb_017987_040--Hb_007666_040 Hb_008053_070 Hb_008053_070 Hb_017987_040--Hb_008053_070 Hb_000322_200 Hb_000322_200 Hb_005000_220--Hb_000322_200 Hb_005000_220--Hb_007666_040 Hb_005000_220--Hb_001489_030 Hb_006106_020 Hb_006106_020 Hb_005000_220--Hb_006106_020 Hb_002917_030 Hb_002917_030 Hb_005000_220--Hb_002917_030 Hb_007729_010 Hb_007729_010 Hb_006198_150--Hb_007729_010 Hb_002019_030 Hb_002019_030 Hb_006198_150--Hb_002019_030 Hb_000836_510 Hb_000836_510 Hb_006198_150--Hb_000836_510 Hb_000185_060 Hb_000185_060 Hb_006198_150--Hb_000185_060 Hb_000856_350 Hb_000856_350 Hb_006198_150--Hb_000856_350 Hb_000043_080 Hb_000043_080 Hb_001489_030--Hb_000043_080 Hb_001489_030--Hb_008503_020 Hb_000300_570 Hb_000300_570 Hb_001489_030--Hb_000300_570 Hb_001489_030--Hb_002917_030 Hb_000265_010 Hb_000265_010 Hb_001489_030--Hb_000265_010 Hb_012053_030 Hb_012053_030 Hb_001489_030--Hb_012053_030 Hb_001709_070 Hb_001709_070 Hb_008503_020--Hb_001709_070 Hb_003086_200 Hb_003086_200 Hb_008503_020--Hb_003086_200 Hb_008503_020--Hb_012053_030 Hb_001864_010 Hb_001864_010 Hb_008503_020--Hb_001864_010 Hb_008503_020--Hb_008053_070 Hb_003117_060 Hb_003117_060 Hb_007666_040--Hb_003117_060 Hb_003385_090 Hb_003385_090 Hb_007666_040--Hb_003385_090 Hb_000535_030 Hb_000535_030 Hb_007666_040--Hb_000535_030 Hb_007666_040--Hb_012053_030 Hb_001114_210 Hb_001114_210 Hb_007666_040--Hb_001114_210 Hb_007666_040--Hb_001489_030 Hb_008616_020 Hb_008616_020 Hb_008053_070--Hb_008616_020 Hb_008053_070--Hb_000185_060 Hb_032582_010 Hb_032582_010 Hb_008053_070--Hb_032582_010 Hb_008053_070--Hb_012053_030 Hb_002677_010 Hb_002677_010 Hb_008053_070--Hb_002677_010 Hb_001376_040 Hb_001376_040 Hb_008053_070--Hb_001376_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.93441 0.0703205 0.0575349 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0841619 0.0331008 0 2.05646 0.0683849

CAGE analysis