Hb_017987_060

Information

Type -
Description -
Location Contig17987: 49492-49680
Sequence    

Annotation

kegg
ID sita:101765659
description uncharacterized LOC101765659
nr
ID KDP41564.1
description hypothetical protein JCGZ_15971 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LBT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15971 PE=4 SV=1
Gene Ontology
ID GO:0016301
description branched-chain amino acid

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17373: 49295-49879
cDNA
(Sanger)
(ID:Location)		 016_L01.ab1: 49366-49718 , 019_K23.ab1: 49366-49719 , 030_A03.ab1: 49363-49829 , 035_C12.ab1: 49366-49718 , 043_A16.ab1: 49363-49716 , 053_E05.ab1: 49363-49829

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_060 0.0 - - hypothetical protein JCGZ_15971 [Jatropha curcas]
2 Hb_001956_070 0.0853428743 - - PREDICTED: telomere repeat-binding protein 2 isoform X2 [Jatropha curcas]
3 Hb_000141_020 0.1090896859 transcription factor TF Family: GRAS PREDICTED: scarecrow-like protein 6 [Pyrus x bretschneideri]
4 Hb_000802_100 0.1281963951 - - PREDICTED: uncharacterized protein LOC105634009 [Jatropha curcas]
5 Hb_003504_020 0.1334122224 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
6 Hb_003579_030 0.1410279775 - - phosphatase 2C family protein [Populus trichocarpa]
7 Hb_000069_700 0.1423773225 - - hypothetical protein B456_005G003200 [Gossypium raimondii]
8 Hb_012545_050 0.1441014622 - - PREDICTED: serine carboxypeptidase II-3-like [Jatropha curcas]
9 Hb_002774_050 0.1475880387 - - PREDICTED: uncharacterized protein LOC105630601 [Jatropha curcas]
10 Hb_000125_030 0.1542214196 transcription factor TF Family: mTERF hypothetical protein PRUPE_ppa019510mg, partial [Prunus persica]
11 Hb_000110_320 0.1545696073 - - PREDICTED: ceramide-1-phosphate transfer protein [Jatropha curcas]
12 Hb_000784_030 0.1547509958 - - neutral/alkaline invertase 2 [Hevea brasiliensis]
13 Hb_008948_100 0.1547725029 - - PREDICTED: SPX domain-containing protein 1-like [Jatropha curcas]
14 Hb_000099_130 0.156059951 - - PREDICTED: uncharacterized protein LOC105645728 [Jatropha curcas]
15 Hb_002027_400 0.1569607363 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
16 Hb_001172_120 0.158021174 - - hypothetical protein B456_012G082000 [Gossypium raimondii]
17 Hb_032969_030 0.1588244508 - - calmodulin binding protein, putative [Ricinus communis]
18 Hb_001235_110 0.1592000038 - - PREDICTED: vesicle-associated protein 1-2-like [Jatropha curcas]
19 Hb_001616_030 0.1605076476 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor-like protein At4g13040 isoform X2 [Jatropha curcas]
20 Hb_001314_040 0.1612882808 - - hypothetical protein POPTR_0011s10470g [Populus trichocarpa]

Gene co-expression network

sample Hb_017987_060 Hb_017987_060 Hb_001956_070 Hb_001956_070 Hb_017987_060--Hb_001956_070 Hb_000141_020 Hb_000141_020 Hb_017987_060--Hb_000141_020 Hb_000802_100 Hb_000802_100 Hb_017987_060--Hb_000802_100 Hb_003504_020 Hb_003504_020 Hb_017987_060--Hb_003504_020 Hb_003579_030 Hb_003579_030 Hb_017987_060--Hb_003579_030 Hb_000069_700 Hb_000069_700 Hb_017987_060--Hb_000069_700 Hb_000110_320 Hb_000110_320 Hb_001956_070--Hb_000110_320 Hb_001956_070--Hb_003579_030 Hb_001956_070--Hb_000141_020 Hb_001616_030 Hb_001616_030 Hb_001956_070--Hb_001616_030 Hb_000125_030 Hb_000125_030 Hb_001956_070--Hb_000125_030 Hb_000141_020--Hb_003504_020 Hb_000141_020--Hb_000125_030 Hb_000406_120 Hb_000406_120 Hb_000141_020--Hb_000406_120 Hb_000099_130 Hb_000099_130 Hb_000141_020--Hb_000099_130 Hb_001159_080 Hb_001159_080 Hb_000141_020--Hb_001159_080 Hb_001314_040 Hb_001314_040 Hb_000802_100--Hb_001314_040 Hb_002876_120 Hb_002876_120 Hb_000802_100--Hb_002876_120 Hb_001157_010 Hb_001157_010 Hb_000802_100--Hb_001157_010 Hb_000530_070 Hb_000530_070 Hb_000802_100--Hb_000530_070 Hb_000802_100--Hb_003579_030 Hb_003581_260 Hb_003581_260 Hb_000802_100--Hb_003581_260 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_007429_030 Hb_007429_030 Hb_003504_020--Hb_007429_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003504_020--Hb_003579_030 Hb_003579_030--Hb_002876_120 Hb_002999_050 Hb_002999_050 Hb_003579_030--Hb_002999_050 Hb_002097_060 Hb_002097_060 Hb_003579_030--Hb_002097_060 Hb_020301_040 Hb_020301_040 Hb_003579_030--Hb_020301_040 Hb_003579_030--Hb_001616_030 Hb_001633_030 Hb_001633_030 Hb_003579_030--Hb_001633_030 Hb_001172_120 Hb_001172_120 Hb_000069_700--Hb_001172_120 Hb_001235_110 Hb_001235_110 Hb_000069_700--Hb_001235_110 Hb_001726_040 Hb_001726_040 Hb_000069_700--Hb_001726_040 Hb_000069_700--Hb_001633_030 Hb_007192_100 Hb_007192_100 Hb_000069_700--Hb_007192_100 Hb_000567_410 Hb_000567_410 Hb_000069_700--Hb_000567_410
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
231.364 287.233 285.945 139.052 48.6327 168.474
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
888.662 1054.62 1001.04 140.33 101.272

CAGE analysis