Hb_017987_070

Information

Type transcription factor
Description TF Family: HB
Location Contig17987: 56571-58231
Sequence    

Annotation

kegg
ID rcu:RCOM_1585300
description homeobox protein, putative
nr
ID XP_012068141.1
description PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
swissprot
ID P46604
description Homeobox-leucine zipper protein HAT22 OS=Arabidopsis thaliana GN=HAT22 PE=1 SV=1
trembl
ID A0A067L2U6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox-leucine zipper protein hat22-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17374: 56752-58182
cDNA
(Sanger)
(ID:Location)		 047_M10.ab1: 56747-57826

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_070 0.0 transcription factor TF Family: HB PREDICTED: homeobox-leucine zipper protein HAT22-like [Jatropha curcas]
2 Hb_026698_010 0.1451448712 - - 2,4-dienoyl-CoA reductase, putative [Ricinus communis]
3 Hb_000340_010 0.153540785 - - -
4 Hb_001274_020 0.157329208 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
5 Hb_000261_490 0.1600544784 - - PREDICTED: cyclin-dependent kinase inhibitor 5 [Jatropha curcas]
6 Hb_169325_010 0.1691282057 - - PREDICTED: uncharacterized protein LOC103699787, partial [Phoenix dactylifera]
7 Hb_002783_230 0.1715677196 - - neutral/alkaline invertase [Manihot esculenta]
8 Hb_001186_060 0.1720495185 - - -
9 Hb_017987_090 0.1754931162 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
10 Hb_004607_150 0.1761583528 - - PREDICTED: serine/threonine-protein kinase UCNL [Jatropha curcas]
11 Hb_000033_050 0.1772257514 - - -
12 Hb_004129_130 0.1778070193 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
13 Hb_010407_070 0.1787307154 - - hypothetical protein POPTR_0008s16750g [Populus trichocarpa]
14 Hb_015401_020 0.1793026027 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
15 Hb_180333_010 0.1794353431 - - -
16 Hb_007849_040 0.1799538971 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
17 Hb_000339_070 0.1827260202 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]
18 Hb_000500_040 0.184762376 - - conserved hypothetical protein [Ricinus communis]
19 Hb_000138_040 0.1860234849 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
20 Hb_001817_180 0.186543931 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]

Gene co-expression network

sample Hb_017987_070 Hb_017987_070 Hb_026698_010 Hb_026698_010 Hb_017987_070--Hb_026698_010 Hb_000340_010 Hb_000340_010 Hb_017987_070--Hb_000340_010 Hb_001274_020 Hb_001274_020 Hb_017987_070--Hb_001274_020 Hb_000261_490 Hb_000261_490 Hb_017987_070--Hb_000261_490 Hb_169325_010 Hb_169325_010 Hb_017987_070--Hb_169325_010 Hb_002783_230 Hb_002783_230 Hb_017987_070--Hb_002783_230 Hb_010407_070 Hb_010407_070 Hb_026698_010--Hb_010407_070 Hb_004225_180 Hb_004225_180 Hb_026698_010--Hb_004225_180 Hb_000599_140 Hb_000599_140 Hb_026698_010--Hb_000599_140 Hb_000457_170 Hb_000457_170 Hb_026698_010--Hb_000457_170 Hb_004607_150 Hb_004607_150 Hb_026698_010--Hb_004607_150 Hb_000465_310 Hb_000465_310 Hb_000340_010--Hb_000465_310 Hb_027380_160 Hb_027380_160 Hb_000340_010--Hb_027380_160 Hb_153150_010 Hb_153150_010 Hb_000340_010--Hb_153150_010 Hb_024399_010 Hb_024399_010 Hb_000340_010--Hb_024399_010 Hb_096962_020 Hb_096962_020 Hb_000340_010--Hb_096962_020 Hb_015401_020 Hb_015401_020 Hb_001274_020--Hb_015401_020 Hb_000500_040 Hb_000500_040 Hb_001274_020--Hb_000500_040 Hb_000138_040 Hb_000138_040 Hb_001274_020--Hb_000138_040 Hb_001516_100 Hb_001516_100 Hb_001274_020--Hb_001516_100 Hb_000836_360 Hb_000836_360 Hb_001274_020--Hb_000836_360 Hb_000808_180 Hb_000808_180 Hb_001274_020--Hb_000808_180 Hb_000042_030 Hb_000042_030 Hb_000261_490--Hb_000042_030 Hb_000078_180 Hb_000078_180 Hb_000261_490--Hb_000078_180 Hb_001318_030 Hb_001318_030 Hb_000261_490--Hb_001318_030 Hb_000261_490--Hb_000457_170 Hb_003929_260 Hb_003929_260 Hb_000261_490--Hb_003929_260 Hb_005843_100 Hb_005843_100 Hb_000261_490--Hb_005843_100 Hb_169325_010--Hb_004607_150 Hb_169325_010--Hb_000261_490 Hb_000483_350 Hb_000483_350 Hb_169325_010--Hb_000483_350 Hb_169325_010--Hb_000042_030 Hb_180333_010 Hb_180333_010 Hb_169325_010--Hb_180333_010 Hb_000714_020 Hb_000714_020 Hb_002783_230--Hb_000714_020 Hb_011930_010 Hb_011930_010 Hb_002783_230--Hb_011930_010 Hb_000481_010 Hb_000481_010 Hb_002783_230--Hb_000481_010 Hb_001514_020 Hb_001514_020 Hb_002783_230--Hb_001514_020 Hb_005031_070 Hb_005031_070 Hb_002783_230--Hb_005031_070 Hb_002783_230--Hb_024399_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
322.253 233.292 2.96935 10.1183 166.663 165.28
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
117.184 206.397 175.884 42.7906 1.76278

CAGE analysis