Hb_017987_090

Information

Type transcription factor
Description TF Family: HB
Location Contig17987: 67441-74555
Sequence    

Annotation

kegg
ID tcc:TCM_034627
description KNOTTED-like from
nr
ID XP_012068139.1
description PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
swissprot
ID O04135
description Homeobox protein knotted-1-like 2 OS=Malus domestica PE=2 SV=1
trembl
ID A0A067KZF3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_15969 PE=4 SV=1
Gene Ontology
ID GO:0005634
description knat1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17375: 67683-74292 , PASA_asmbl_17376: 73474-74354 , PASA_asmbl_17377: 73570-74284
cDNA
(Sanger)
(ID:Location)		 050_B09.ab1: 73474-74111

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017987_090 0.0 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
2 Hb_000050_100 0.0926332729 - - PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
3 Hb_000953_140 0.1146452868 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
4 Hb_007849_040 0.128282113 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 1-like [Vitis vinifera]
5 Hb_000050_090 0.1293516908 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
6 Hb_015401_020 0.1317591771 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_001817_180 0.1435177535 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
8 Hb_004931_040 0.1469378983 - - splicing factor-related family protein [Populus trichocarpa]
9 Hb_002960_060 0.147121791 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 28 [Jatropha curcas]
10 Hb_000139_240 0.1476631911 - - PREDICTED: putative F-box protein At3g16210 [Jatropha curcas]
11 Hb_000138_040 0.1492333508 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
12 Hb_000703_060 0.1507941258 - - phosphoenolpyruvate carboxylase [Manihot esculenta]
13 Hb_011472_040 0.1521003088 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
14 Hb_000076_290 0.1534238141 - - translation factor sui1, putative [Ricinus communis]
15 Hb_001439_180 0.1540239301 - - hypothetical protein POPTR_0004s13090g [Populus trichocarpa]
16 Hb_001274_020 0.1547603781 desease resistance Gene Name: ABC_tran ABC transporter GCN1 [Hevea brasiliensis]
17 Hb_000029_160 0.1562995971 - - Nitrilase, putative [Ricinus communis]
18 Hb_029281_010 0.1570705219 - - hypothetical protein JCGZ_04025 [Jatropha curcas]
19 Hb_001186_060 0.1576163234 - - -
20 Hb_001975_070 0.1580364225 - - eukaryotic translation elongation factor 1B alpha-subunit [Hevea brasiliensis]

Gene co-expression network

sample Hb_017987_090 Hb_017987_090 Hb_000050_100 Hb_000050_100 Hb_017987_090--Hb_000050_100 Hb_000953_140 Hb_000953_140 Hb_017987_090--Hb_000953_140 Hb_007849_040 Hb_007849_040 Hb_017987_090--Hb_007849_040 Hb_000050_090 Hb_000050_090 Hb_017987_090--Hb_000050_090 Hb_015401_020 Hb_015401_020 Hb_017987_090--Hb_015401_020 Hb_001817_180 Hb_001817_180 Hb_017987_090--Hb_001817_180 Hb_000050_100--Hb_000050_090 Hb_000703_060 Hb_000703_060 Hb_000050_100--Hb_000703_060 Hb_010407_070 Hb_010407_070 Hb_000050_100--Hb_010407_070 Hb_026698_010 Hb_026698_010 Hb_000050_100--Hb_026698_010 Hb_000139_240 Hb_000139_240 Hb_000050_100--Hb_000139_240 Hb_004931_040 Hb_004931_040 Hb_000953_140--Hb_004931_040 Hb_000926_270 Hb_000926_270 Hb_000953_140--Hb_000926_270 Hb_160818_010 Hb_160818_010 Hb_000953_140--Hb_160818_010 Hb_001776_080 Hb_001776_080 Hb_000953_140--Hb_001776_080 Hb_002149_040 Hb_002149_040 Hb_000953_140--Hb_002149_040 Hb_003050_090 Hb_003050_090 Hb_000953_140--Hb_003050_090 Hb_000567_200 Hb_000567_200 Hb_007849_040--Hb_000567_200 Hb_001186_060 Hb_001186_060 Hb_007849_040--Hb_001186_060 Hb_003978_010 Hb_003978_010 Hb_007849_040--Hb_003978_010 Hb_001195_100 Hb_001195_100 Hb_007849_040--Hb_001195_100 Hb_000033_050 Hb_000033_050 Hb_007849_040--Hb_000033_050 Hb_000050_090--Hb_000703_060 Hb_005702_030 Hb_005702_030 Hb_000050_090--Hb_005702_030 Hb_000703_240 Hb_000703_240 Hb_000050_090--Hb_000703_240 Hb_011344_170 Hb_011344_170 Hb_000050_090--Hb_011344_170 Hb_000076_290 Hb_000076_290 Hb_015401_020--Hb_000076_290 Hb_000174_200 Hb_000174_200 Hb_015401_020--Hb_000174_200 Hb_001274_020 Hb_001274_020 Hb_015401_020--Hb_001274_020 Hb_001439_180 Hb_001439_180 Hb_015401_020--Hb_001439_180 Hb_005314_010 Hb_005314_010 Hb_015401_020--Hb_005314_010 Hb_002270_010 Hb_002270_010 Hb_015401_020--Hb_002270_010 Hb_000138_040 Hb_000138_040 Hb_001817_180--Hb_000138_040 Hb_001454_060 Hb_001454_060 Hb_001817_180--Hb_001454_060 Hb_001057_010 Hb_001057_010 Hb_001817_180--Hb_001057_010 Hb_000358_080 Hb_000358_080 Hb_001817_180--Hb_000358_080 Hb_029281_010 Hb_029281_010 Hb_001817_180--Hb_029281_010 Hb_000172_400 Hb_000172_400 Hb_001817_180--Hb_000172_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
205.851 125.768 0.0916461 5.61761 164.028 164.822
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
100.142 63.9025 97.8932 79.0207 0

CAGE analysis