Hb_018006_020

Information

Type -
Description -
Location Contig18006: 3286-4508
Sequence    

Annotation

kegg
ID atr:s00876p00007370
description AMTR_s00876p00007370; hypothetical protein
nr
ID XP_012081341.1
description PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W1NRU2
description Uncharacterized protein (Fragment) OS=Amborella trichopoda GN=AMTR_s00876p00007370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018006_020 0.0 - - PREDICTED: uncharacterized protein LOC105641417 [Jatropha curcas]
2 Hb_006053_010 1.72286e-05 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
3 Hb_000914_160 2.95314e-05 - - PREDICTED: pentatricopeptide repeat-containing protein At2g22410, mitochondrial-like [Glycine max]
4 Hb_007393_010 4.84827e-05 - - PREDICTED: uncharacterized protein LOC105634374 [Jatropha curcas]
5 Hb_000111_160 6.14213e-05 - - Disease resistance family protein / LRR family protein, putative [Theobroma cacao]
6 Hb_004899_270 8.92943e-05 - - PREDICTED: beta-galactosidase 15-like [Cucumis sativus]
7 Hb_123098_010 0.0001098557 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_028462_010 0.0001125637 - - PREDICTED: uncharacterized protein LOC101509514 [Cicer arietinum]
9 Hb_000413_310 0.0001465877 - - -
10 Hb_000098_160 0.0001593044 - - conserved hypothetical protein [Ricinus communis]
11 Hb_003052_160 0.0001593044 - - -
12 Hb_002130_010 0.0002237801 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
13 Hb_061463_010 0.0002366665 - - Cucumisin precursor, putative [Ricinus communis]
14 Hb_185616_010 0.0002739653 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_012543_020 0.0002809593 - - -
16 Hb_000482_130 0.0002853196 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
17 Hb_000510_380 0.0002902121 - - -
18 Hb_002997_130 0.0004768542 - - -
19 Hb_000270_820 0.0521274336 - - -
20 Hb_003675_010 0.0835160386 - - Flavonol 3-sulfotransferase, putative [Ricinus communis]

Gene co-expression network

sample Hb_018006_020 Hb_018006_020 Hb_006053_010 Hb_006053_010 Hb_018006_020--Hb_006053_010 Hb_000914_160 Hb_000914_160 Hb_018006_020--Hb_000914_160 Hb_007393_010 Hb_007393_010 Hb_018006_020--Hb_007393_010 Hb_000111_160 Hb_000111_160 Hb_018006_020--Hb_000111_160 Hb_004899_270 Hb_004899_270 Hb_018006_020--Hb_004899_270 Hb_123098_010 Hb_123098_010 Hb_018006_020--Hb_123098_010 Hb_006053_010--Hb_000914_160 Hb_006053_010--Hb_007393_010 Hb_006053_010--Hb_000111_160 Hb_006053_010--Hb_004899_270 Hb_006053_010--Hb_123098_010 Hb_000914_160--Hb_007393_010 Hb_000914_160--Hb_000111_160 Hb_000413_310 Hb_000413_310 Hb_000914_160--Hb_000413_310 Hb_000914_160--Hb_004899_270 Hb_007393_010--Hb_000413_310 Hb_007393_010--Hb_000111_160 Hb_000098_160 Hb_000098_160 Hb_007393_010--Hb_000098_160 Hb_000111_160--Hb_004899_270 Hb_000111_160--Hb_123098_010 Hb_028462_010 Hb_028462_010 Hb_000111_160--Hb_028462_010 Hb_004899_270--Hb_123098_010 Hb_004899_270--Hb_028462_010 Hb_123098_010--Hb_028462_010 Hb_123098_010--Hb_000914_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0473722 0.0372599 0 0 0

CAGE analysis