Hb_018043_010

Information

Type -
Description -
Location Contig18043: 11423-11716
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13030g
description POPTRDRAFT_649287; auxin-responsive family protein
nr
ID XP_012084400.1
description PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
swissprot
ID Q9FJG0
description Auxin-responsive protein SAUR20 OS=Arabidopsis thaliana GN=SAUR20 PE=2 SV=1
trembl
ID F6I158
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0038g01310 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17468: 11280-11947
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018043_010 0.0 - - PREDICTED: auxin-induced protein 15A-like [Jatropha curcas]
2 Hb_007407_010 0.1117711884 transcription factor TF Family: WRKY PREDICTED: probable WRKY transcription factor 74 [Populus euphratica]
3 Hb_133845_010 0.112450702 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
4 Hb_000133_060 0.1164241514 - - PREDICTED: protein YLS9-like [Jatropha curcas]
5 Hb_001922_100 0.1281568753 - - S-type anion channel SLAH2 [Triticum urartu]
6 Hb_019654_010 0.1404666038 - - multicopper oxidase, putative [Ricinus communis]
7 Hb_009683_010 0.143484772 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
8 Hb_005605_030 0.1438997944 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
9 Hb_000302_150 0.1467513549 transcription factor TF Family: WRKY hypothetical protein RCOM_1581940 [Ricinus communis]
10 Hb_000110_330 0.147096242 - - PREDICTED: probable nitrite transporter At1g68570-like [Glycine max]
11 Hb_174380_010 0.1478245179 - - kinase, putative [Ricinus communis]
12 Hb_012545_080 0.1533832959 - - PREDICTED: uncharacterized protein LOC105633680 [Jatropha curcas]
13 Hb_012404_050 0.1534673538 - - PREDICTED: uncharacterized protein LOC101496717 [Cicer arietinum]
14 Hb_022206_030 0.1568062236 - - Auxin-induced in root cultures protein 12 precursor, putative [Ricinus communis]
15 Hb_001289_030 0.1608849694 - - syntaxin, plant, putative [Ricinus communis]
16 Hb_009083_010 0.1610059701 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
17 Hb_000649_160 0.1613234237 - - PREDICTED: nudix hydrolase 18, mitochondrial [Jatropha curcas]
18 Hb_002205_260 0.1617101975 transcription factor TF Family: WRKY PREDICTED: WRKY transcription factor 55 [Jatropha curcas]
19 Hb_001568_120 0.1631670584 - - hypothetical protein JCGZ_05918 [Jatropha curcas]
20 Hb_041145_010 0.1643517514 - - hypothetical protein CISIN_1g021653mg [Citrus sinensis]

Gene co-expression network

sample Hb_018043_010 Hb_018043_010 Hb_007407_010 Hb_007407_010 Hb_018043_010--Hb_007407_010 Hb_133845_010 Hb_133845_010 Hb_018043_010--Hb_133845_010 Hb_000133_060 Hb_000133_060 Hb_018043_010--Hb_000133_060 Hb_001922_100 Hb_001922_100 Hb_018043_010--Hb_001922_100 Hb_019654_010 Hb_019654_010 Hb_018043_010--Hb_019654_010 Hb_009683_010 Hb_009683_010 Hb_018043_010--Hb_009683_010 Hb_007407_010--Hb_000133_060 Hb_005605_030 Hb_005605_030 Hb_007407_010--Hb_005605_030 Hb_000110_330 Hb_000110_330 Hb_007407_010--Hb_000110_330 Hb_002205_260 Hb_002205_260 Hb_007407_010--Hb_002205_260 Hb_007407_010--Hb_009683_010 Hb_012545_080 Hb_012545_080 Hb_007407_010--Hb_012545_080 Hb_133845_010--Hb_000110_330 Hb_133845_010--Hb_007407_010 Hb_012404_050 Hb_012404_050 Hb_133845_010--Hb_012404_050 Hb_133845_010--Hb_000133_060 Hb_041145_010 Hb_041145_010 Hb_133845_010--Hb_041145_010 Hb_000133_060--Hb_002205_260 Hb_000133_060--Hb_000110_330 Hb_000133_060--Hb_012545_080 Hb_019961_010 Hb_019961_010 Hb_000133_060--Hb_019961_010 Hb_174380_010 Hb_174380_010 Hb_000133_060--Hb_174380_010 Hb_000302_150 Hb_000302_150 Hb_001922_100--Hb_000302_150 Hb_067028_010 Hb_067028_010 Hb_001922_100--Hb_067028_010 Hb_006395_020 Hb_006395_020 Hb_001922_100--Hb_006395_020 Hb_158111_010 Hb_158111_010 Hb_001922_100--Hb_158111_010 Hb_002119_030 Hb_002119_030 Hb_001922_100--Hb_002119_030 Hb_001846_040 Hb_001846_040 Hb_019654_010--Hb_001846_040 Hb_011287_020 Hb_011287_020 Hb_019654_010--Hb_011287_020 Hb_001477_080 Hb_001477_080 Hb_019654_010--Hb_001477_080 Hb_003582_020 Hb_003582_020 Hb_019654_010--Hb_003582_020 Hb_001289_030 Hb_001289_030 Hb_019654_010--Hb_001289_030 Hb_002922_010 Hb_002922_010 Hb_019654_010--Hb_002922_010 Hb_009683_010--Hb_001289_030 Hb_009683_010--Hb_012545_080 Hb_001568_120 Hb_001568_120 Hb_009683_010--Hb_001568_120 Hb_009683_010--Hb_003582_020 Hb_001411_150 Hb_001411_150 Hb_009683_010--Hb_001411_150
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 31.8403 10.1251 9.36692 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 1.24234 0 4.18919 0

CAGE analysis