Hb_018105_010

Information

Type -
Description -
Location Contig18105: 12095-13196
Sequence    

Annotation

kegg
ID pop:POPTR_0004s08710g
description POPTRDRAFT_198474; hypothetical protein
nr
ID XP_002305869.2
description hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
swissprot
ID O23530
description Protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1 OS=Arabidopsis thaliana GN=SNC1 PE=1 SV=3
trembl
ID B9H393
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0004s08710g PE=4 SV=2
Gene Ontology
ID GO:0005515
description resistance family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018105_010 0.0 - - hypothetical protein POPTR_0004s08710g [Populus trichocarpa]
2 Hb_001999_050 0.1146749129 rubber biosynthesis Gene Name: CPT7 PREDICTED: dehydrodolichyl diphosphate synthase 2 [Jatropha curcas]
3 Hb_000311_110 0.1180243038 - - ATP-binding cassette transporter, putative [Ricinus communis]
4 Hb_004951_030 0.124274074 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
5 Hb_009393_110 0.1284149257 - - PREDICTED: circadian locomoter output cycles protein kaput [Jatropha curcas]
6 Hb_119832_010 0.129440284 - - -
7 Hb_004643_020 0.1390592199 - - hypothetical protein AMTR_s05716p00004100, partial [Amborella trichopoda]
8 Hb_003796_010 0.145931047 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_004372_050 0.1631407579 - - putative receptor-like protein kinase [Morus notabilis]
10 Hb_089305_040 0.1696453769 - - -
11 Hb_008225_020 0.172335566 - - PREDICTED: cytochrome P450 71A26-like [Jatropha curcas]
12 Hb_000951_070 0.1756667949 - - PREDICTED: LOW QUALITY PROTEIN: receptor-like protein kinase FERONIA [Populus euphratica]
13 Hb_002990_020 0.1813583861 - - PREDICTED: vacuolar amino acid transporter 1 [Jatropha curcas]
14 Hb_000289_090 0.1851497575 - - -
15 Hb_003440_080 0.186831337 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_029510_060 0.1899309887 - - PREDICTED: probable plastidic glucose transporter 3 [Jatropha curcas]
17 Hb_000672_130 0.1936056647 - - hypothetical protein POPTR_0010s22870g [Populus trichocarpa]
18 Hb_006040_140 0.1945432909 - - hypothetical protein NitaMp105 [Nicotiana tabacum]
19 Hb_000780_160 0.194684441 - - hypothetical protein RCOM_0483300 [Ricinus communis]
20 Hb_000039_120 0.1947385473 - - PREDICTED: equilibrative nucleotide transporter 3-like [Jatropha curcas]

Gene co-expression network

sample Hb_018105_010 Hb_018105_010 Hb_001999_050 Hb_001999_050 Hb_018105_010--Hb_001999_050 Hb_000311_110 Hb_000311_110 Hb_018105_010--Hb_000311_110 Hb_004951_030 Hb_004951_030 Hb_018105_010--Hb_004951_030 Hb_009393_110 Hb_009393_110 Hb_018105_010--Hb_009393_110 Hb_119832_010 Hb_119832_010 Hb_018105_010--Hb_119832_010 Hb_004643_020 Hb_004643_020 Hb_018105_010--Hb_004643_020 Hb_001999_050--Hb_000311_110 Hb_001205_170 Hb_001205_170 Hb_001999_050--Hb_001205_170 Hb_001999_050--Hb_119832_010 Hb_000039_120 Hb_000039_120 Hb_001999_050--Hb_000039_120 Hb_171900_110 Hb_171900_110 Hb_001999_050--Hb_171900_110 Hb_000311_110--Hb_119832_010 Hb_000311_110--Hb_009393_110 Hb_003440_080 Hb_003440_080 Hb_000311_110--Hb_003440_080 Hb_000780_160 Hb_000780_160 Hb_000311_110--Hb_000780_160 Hb_003796_010 Hb_003796_010 Hb_004951_030--Hb_003796_010 Hb_004951_030--Hb_009393_110 Hb_004951_030--Hb_119832_010 Hb_004951_030--Hb_004643_020 Hb_008225_020 Hb_008225_020 Hb_004951_030--Hb_008225_020 Hb_009393_110--Hb_003796_010 Hb_009393_110--Hb_008225_020 Hb_009393_110--Hb_119832_010 Hb_000951_070 Hb_000951_070 Hb_009393_110--Hb_000951_070 Hb_029510_060 Hb_029510_060 Hb_119832_010--Hb_029510_060 Hb_119832_010--Hb_003440_080 Hb_119832_010--Hb_003796_010 Hb_004643_020--Hb_003796_010 Hb_089305_040 Hb_089305_040 Hb_004643_020--Hb_089305_040 Hb_001300_090 Hb_001300_090 Hb_004643_020--Hb_001300_090 Hb_002990_020 Hb_002990_020 Hb_004643_020--Hb_002990_020 Hb_004643_020--Hb_009393_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.46431 0.269038 0.42617 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0534031 0.0419996 0 0.0169077 3.08359

CAGE analysis