Hb_018118_010

Information

Type -
Description -
Location Contig18118: 12161-22822
Sequence    

Annotation

kegg
ID rcu:RCOM_0586580
description DNA polymerase I, putative (EC:2.7.7.7)
nr
ID XP_002522989.1
description DNA polymerase I, putative [Ricinus communis]
swissprot
ID F4I6M1
description DNA polymerase I A, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=POLIA PE=2 SV=1
trembl
ID B9SAH0
description DNA polymerase I, putative OS=Ricinus communis GN=RCOM_0586580 PE=3 SV=1
Gene Ontology
ID GO:0003677
description dna polymerase i chloroplastic mitochondrial-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17593: 12190-17957 , PASA_asmbl_17594: 18451-21010 , PASA_asmbl_17596: 21036-22621
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018118_010 0.0 - - DNA polymerase I, putative [Ricinus communis]
2 Hb_000331_560 0.0683943546 transcription factor TF Family: C2H2 PREDICTED: lysine-specific demethylase REF6 [Jatropha curcas]
3 Hb_000265_230 0.0696325334 transcription factor TF Family: HB PREDICTED: uncharacterized protein LOC105643603 isoform X1 [Jatropha curcas]
4 Hb_003203_030 0.0706830266 - - PREDICTED: pentatricopeptide repeat-containing protein At2g13600-like [Jatropha curcas]
5 Hb_009252_040 0.0786994765 - - PREDICTED: protein EXECUTER 2, chloroplastic [Jatropha curcas]
6 Hb_000679_020 0.0816452408 transcription factor TF Family: HB PREDICTED: transcription initiation factor TFIID subunit 11 [Jatropha curcas]
7 Hb_004003_040 0.0828032329 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
8 Hb_000349_240 0.0844536757 - - PREDICTED: probable aminotransferase ACS10 isoform X1 [Jatropha curcas]
9 Hb_000300_120 0.0844644307 - - PREDICTED: zinc finger protein VAR3, chloroplastic [Jatropha curcas]
10 Hb_006816_430 0.087913359 - - PREDICTED: topless-related protein 3 isoform X1 [Jatropha curcas]
11 Hb_000661_030 0.0882554618 - - PREDICTED: uncharacterized protein LOC105650374 [Jatropha curcas]
12 Hb_000906_100 0.0892210314 - - PREDICTED: uncharacterized protein LOC105648070 [Jatropha curcas]
13 Hb_000731_010 0.090035349 - - PREDICTED: ATP-dependent Clp protease proteolytic subunit-related protein 1, chloroplastic [Jatropha curcas]
14 Hb_000007_010 0.0904740903 - - PREDICTED: protein PHYLLO, chloroplastic [Jatropha curcas]
15 Hb_006295_020 0.0908159601 - - PREDICTED: serine/threonine-protein kinase ATR isoform X1 [Jatropha curcas]
16 Hb_143489_010 0.0910298074 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 50 isoform X2 [Jatropha curcas]
17 Hb_000033_110 0.0922018677 - - hypothetical protein JCGZ_19253 [Jatropha curcas]
18 Hb_001259_020 0.092309635 - - PREDICTED: translocase of chloroplast 90, chloroplastic [Jatropha curcas]
19 Hb_000005_190 0.0924884781 - - hypothetical protein JCGZ_05438 [Jatropha curcas]
20 Hb_002600_060 0.0937312413 - - PREDICTED: putative nuclear matrix constituent protein 1-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_018118_010 Hb_018118_010 Hb_000331_560 Hb_000331_560 Hb_018118_010--Hb_000331_560 Hb_000265_230 Hb_000265_230 Hb_018118_010--Hb_000265_230 Hb_003203_030 Hb_003203_030 Hb_018118_010--Hb_003203_030 Hb_009252_040 Hb_009252_040 Hb_018118_010--Hb_009252_040 Hb_000679_020 Hb_000679_020 Hb_018118_010--Hb_000679_020 Hb_004003_040 Hb_004003_040 Hb_018118_010--Hb_004003_040 Hb_002600_060 Hb_002600_060 Hb_000331_560--Hb_002600_060 Hb_000331_560--Hb_003203_030 Hb_003506_050 Hb_003506_050 Hb_000331_560--Hb_003506_050 Hb_000300_120 Hb_000300_120 Hb_000331_560--Hb_000300_120 Hb_000331_560--Hb_009252_040 Hb_000788_070 Hb_000788_070 Hb_000265_230--Hb_000788_070 Hb_006816_430 Hb_006816_430 Hb_000265_230--Hb_006816_430 Hb_001191_120 Hb_001191_120 Hb_000265_230--Hb_001191_120 Hb_000025_710 Hb_000025_710 Hb_000265_230--Hb_000025_710 Hb_000265_230--Hb_003203_030 Hb_005348_010 Hb_005348_010 Hb_003203_030--Hb_005348_010 Hb_003203_030--Hb_006816_430 Hb_001862_180 Hb_001862_180 Hb_003203_030--Hb_001862_180 Hb_001259_020 Hb_001259_020 Hb_003203_030--Hb_001259_020 Hb_000731_010 Hb_000731_010 Hb_009252_040--Hb_000731_010 Hb_000033_110 Hb_000033_110 Hb_009252_040--Hb_000033_110 Hb_000749_090 Hb_000749_090 Hb_009252_040--Hb_000749_090 Hb_013405_080 Hb_013405_080 Hb_009252_040--Hb_013405_080 Hb_000864_030 Hb_000864_030 Hb_000679_020--Hb_000864_030 Hb_000661_030 Hb_000661_030 Hb_000679_020--Hb_000661_030 Hb_000174_170 Hb_000174_170 Hb_000679_020--Hb_000174_170 Hb_000563_420 Hb_000563_420 Hb_000679_020--Hb_000563_420 Hb_004920_090 Hb_004920_090 Hb_000679_020--Hb_004920_090 Hb_000906_100 Hb_000906_100 Hb_000679_020--Hb_000906_100 Hb_000346_060 Hb_000346_060 Hb_004003_040--Hb_000346_060 Hb_002027_080 Hb_002027_080 Hb_004003_040--Hb_002027_080 Hb_000441_090 Hb_000441_090 Hb_004003_040--Hb_000441_090 Hb_000193_330 Hb_000193_330 Hb_004003_040--Hb_000193_330 Hb_000797_040 Hb_000797_040 Hb_004003_040--Hb_000797_040 Hb_004003_040--Hb_000731_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.75863 11.8002 9.0481 5.51424 10.4587 14.8829
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.36273 5.39328 7.70885 9.79189 21.1408

CAGE analysis