Hb_018133_020

Information

Type -
Description -
Location Contig18133: 13598-20131
Sequence    

Annotation

kegg
ID rcu:RCOM_1509780
description transporter, putative
nr
ID XP_002511360.1
description transporter, putative [Ricinus communis]
swissprot
ID Q9CWP6
description Motile sperm domain-containing protein 2 OS=Mus musculus GN=Mospd2 PE=1 SV=2
trembl
ID B9RAY5
description Transporter, putative OS=Ricinus communis GN=RCOM_1509780 PE=4 SV=1
Gene Ontology
ID GO:0009507
description sec14p-like phosphatidylinositol transfer family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17605: 13601-20087 , PASA_asmbl_17606: 14704-14911 , PASA_asmbl_17607: 13855-20022
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_020 0.0 - - transporter, putative [Ricinus communis]
2 Hb_131181_010 0.065730417 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
3 Hb_026053_020 0.0666984936 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
4 Hb_001279_080 0.0670057854 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
5 Hb_001318_260 0.0731681599 - - PREDICTED: nitrogen regulatory protein P-II homolog [Jatropha curcas]
6 Hb_012114_070 0.0758061006 - - PREDICTED: uncharacterized protein LOC105645812 [Jatropha curcas]
7 Hb_000840_180 0.078479797 - - protein BOLA2 [Jatropha curcas]
8 Hb_004157_020 0.0793518074 - - PREDICTED: histone H2B-like [Gossypium raimondii]
9 Hb_008071_020 0.0806419415 - - PREDICTED: serine/threonine-protein kinase AFC1 [Jatropha curcas]
10 Hb_003077_020 0.0825629995 - - ABC transporter family protein [Hevea brasiliensis]
11 Hb_004057_010 0.0830040958 - - PREDICTED: uncharacterized protein LOC105649313 [Jatropha curcas]
12 Hb_011512_070 0.0837954983 transcription factor TF Family: PHD Inhibitor of growth protein, putative [Ricinus communis]
13 Hb_007441_330 0.0864135454 - - PREDICTED: acyl carrier protein 1, mitochondrial [Jatropha curcas]
14 Hb_000193_110 0.0877589993 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
15 Hb_000676_390 0.0880946847 - - PREDICTED: protein FMP32, mitochondrial [Jatropha curcas]
16 Hb_000996_140 0.088870155 - - PREDICTED: EKC/KEOPS complex subunit Tprkb [Jatropha curcas]
17 Hb_002540_080 0.0908455687 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_001931_010 0.0921095032 - - PREDICTED: NADH--cytochrome b5 reductase 1-like [Jatropha curcas]
19 Hb_000160_180 0.0950089084 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
20 Hb_000169_040 0.095203635 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]

Gene co-expression network

sample Hb_018133_020 Hb_018133_020 Hb_131181_010 Hb_131181_010 Hb_018133_020--Hb_131181_010 Hb_026053_020 Hb_026053_020 Hb_018133_020--Hb_026053_020 Hb_001279_080 Hb_001279_080 Hb_018133_020--Hb_001279_080 Hb_001318_260 Hb_001318_260 Hb_018133_020--Hb_001318_260 Hb_012114_070 Hb_012114_070 Hb_018133_020--Hb_012114_070 Hb_000840_180 Hb_000840_180 Hb_018133_020--Hb_000840_180 Hb_131181_010--Hb_026053_020 Hb_000160_180 Hb_000160_180 Hb_131181_010--Hb_000160_180 Hb_131181_010--Hb_001279_080 Hb_131181_010--Hb_001318_260 Hb_001329_150 Hb_001329_150 Hb_131181_010--Hb_001329_150 Hb_000189_240 Hb_000189_240 Hb_026053_020--Hb_000189_240 Hb_008071_020 Hb_008071_020 Hb_026053_020--Hb_008071_020 Hb_000996_140 Hb_000996_140 Hb_026053_020--Hb_000996_140 Hb_001141_140 Hb_001141_140 Hb_026053_020--Hb_001141_140 Hb_001279_080--Hb_008071_020 Hb_001931_010 Hb_001931_010 Hb_001279_080--Hb_001931_010 Hb_000431_070 Hb_000431_070 Hb_001279_080--Hb_000431_070 Hb_000045_310 Hb_000045_310 Hb_001279_080--Hb_000045_310 Hb_000566_120 Hb_000566_120 Hb_001279_080--Hb_000566_120 Hb_001318_260--Hb_001279_080 Hb_002540_080 Hb_002540_080 Hb_001318_260--Hb_002540_080 Hb_002872_050 Hb_002872_050 Hb_001318_260--Hb_002872_050 Hb_001318_260--Hb_000160_180 Hb_003038_240 Hb_003038_240 Hb_012114_070--Hb_003038_240 Hb_000155_200 Hb_000155_200 Hb_012114_070--Hb_000155_200 Hb_000614_220 Hb_000614_220 Hb_012114_070--Hb_000614_220 Hb_000614_160 Hb_000614_160 Hb_012114_070--Hb_000614_160 Hb_004157_020 Hb_004157_020 Hb_012114_070--Hb_004157_020 Hb_000169_040 Hb_000169_040 Hb_000840_180--Hb_000169_040 Hb_004127_020 Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_002798_020 Hb_002798_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_000840_180--Hb_026053_020 Hb_000840_180--Hb_000996_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.70734 5.10556 13.8785 9.52607 6.20895 7.0786
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.703 26.8138 11.5795 4.9668 11.5909

CAGE analysis