Hb_018133_060

Information

Type -
Description -
Location Contig18133: 51033-54737
Sequence    

Annotation

kegg
ID pop:POPTR_0013s01650g
description POPTRDRAFT_729516; transcription factor S-II domain-containing family protein
nr
ID XP_012091013.1
description PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
swissprot
ID O94703
description DNA-directed RNA polymerase I subunit RPA12 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=rpa12 PE=3 SV=1
trembl
ID B9I7D2
description DNA-directed RNA polymerase subunit OS=Populus trichocarpa GN=POPTR_0013s01650g PE=3 SV=1
Gene Ontology
ID GO:0003676
description dna-directed rna polymerase i subunit rpa12-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17619: 49875-54744 , PASA_asmbl_17620: 49887-54456
cDNA
(Sanger)
(ID:Location)		 017_E21.ab1: 50597-54744 , 017_I24.ab1: 49887-54332 , 020_I19.ab1: 49875-54668 , 034_H15.ab1: 49887-54332 , 040_K12.ab1: 49887-54332

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_060 0.0 - - PREDICTED: DNA-directed RNA polymerase I subunit RPA12-like [Jatropha curcas]
2 Hb_000444_050 0.0755863006 transcription factor TF Family: HMG PREDICTED: uncharacterized protein LOC105648212 isoform X2 [Jatropha curcas]
3 Hb_001604_080 0.0778746821 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
4 Hb_023732_070 0.0785961479 - - PREDICTED: 60S acidic ribosomal protein P2B-like [Populus euphratica]
5 Hb_011781_030 0.0787094177 - - Frataxin, mitochondrial precursor, putative [Ricinus communis]
6 Hb_010180_020 0.0790409307 - - hypothetical protein glysoja_030394 [Glycine soja]
7 Hb_000086_070 0.080013092 - - Peptidase S24/S26A/S26B/S26C family protein isoform 1 [Theobroma cacao]
8 Hb_003687_110 0.080259136 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
9 Hb_000274_020 0.081440433 - - PREDICTED: uncharacterized protein LOC105630805 isoform X1 [Jatropha curcas]
10 Hb_000840_030 0.0823223056 transcription factor TF Family: IWS1 PREDICTED: probable mediator of RNA polymerase II transcription subunit 26c isoform X2 [Jatropha curcas]
11 Hb_001133_020 0.0830610929 - - PREDICTED: probable E3 ubiquitin ligase complex SCF subunit sconB [Jatropha curcas]
12 Hb_006541_030 0.0837997437 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
13 Hb_002874_190 0.084982782 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
14 Hb_011794_070 0.0863678402 - - PREDICTED: 60S ribosomal protein L36-2-like [Jatropha curcas]
15 Hb_000024_080 0.0865964454 - - PREDICTED: probable complex I intermediate-associated protein 30 isoform X2 [Jatropha curcas]
16 Hb_000815_040 0.087312777 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_000317_340 0.0873130084 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000085_320 0.0883642513 - - Uncharacterized protein TCM_030749 [Theobroma cacao]
19 Hb_032202_090 0.0885799284 - - PREDICTED: ubiquitin-related modifier 1 homolog 2 [Jatropha curcas]
20 Hb_001314_100 0.0889486087 - - hypothetical protein POPTR_0001s01820g [Populus trichocarpa]

Gene co-expression network

sample Hb_018133_060 Hb_018133_060 Hb_000444_050 Hb_000444_050 Hb_018133_060--Hb_000444_050 Hb_001604_080 Hb_001604_080 Hb_018133_060--Hb_001604_080 Hb_023732_070 Hb_023732_070 Hb_018133_060--Hb_023732_070 Hb_011781_030 Hb_011781_030 Hb_018133_060--Hb_011781_030 Hb_010180_020 Hb_010180_020 Hb_018133_060--Hb_010180_020 Hb_000086_070 Hb_000086_070 Hb_018133_060--Hb_000086_070 Hb_000087_020 Hb_000087_020 Hb_000444_050--Hb_000087_020 Hb_000205_270 Hb_000205_270 Hb_000444_050--Hb_000205_270 Hb_000444_050--Hb_000086_070 Hb_005997_010 Hb_005997_010 Hb_000444_050--Hb_005997_010 Hb_000444_050--Hb_023732_070 Hb_000329_310 Hb_000329_310 Hb_000444_050--Hb_000329_310 Hb_001604_080--Hb_010180_020 Hb_000815_040 Hb_000815_040 Hb_001604_080--Hb_000815_040 Hb_000103_560 Hb_000103_560 Hb_001604_080--Hb_000103_560 Hb_063716_050 Hb_063716_050 Hb_001604_080--Hb_063716_050 Hb_000926_250 Hb_000926_250 Hb_001604_080--Hb_000926_250 Hb_000529_190 Hb_000529_190 Hb_001604_080--Hb_000529_190 Hb_000465_060 Hb_000465_060 Hb_023732_070--Hb_000465_060 Hb_000970_010 Hb_000970_010 Hb_023732_070--Hb_000970_010 Hb_001824_070 Hb_001824_070 Hb_023732_070--Hb_001824_070 Hb_000371_080 Hb_000371_080 Hb_023732_070--Hb_000371_080 Hb_001584_070 Hb_001584_070 Hb_023732_070--Hb_001584_070 Hb_000483_410 Hb_000483_410 Hb_011781_030--Hb_000483_410 Hb_143629_230 Hb_143629_230 Hb_011781_030--Hb_143629_230 Hb_000840_030 Hb_000840_030 Hb_011781_030--Hb_000840_030 Hb_000340_140 Hb_000340_140 Hb_011781_030--Hb_000340_140 Hb_000317_340 Hb_000317_340 Hb_011781_030--Hb_000317_340 Hb_004545_060 Hb_004545_060 Hb_010180_020--Hb_004545_060 Hb_004306_020 Hb_004306_020 Hb_010180_020--Hb_004306_020 Hb_002411_170 Hb_002411_170 Hb_010180_020--Hb_002411_170 Hb_000024_080 Hb_000024_080 Hb_010180_020--Hb_000024_080 Hb_010180_020--Hb_000815_040 Hb_003927_130 Hb_003927_130 Hb_000086_070--Hb_003927_130 Hb_001829_060 Hb_001829_060 Hb_000086_070--Hb_001829_060 Hb_001109_020 Hb_001109_020 Hb_000086_070--Hb_001109_020 Hb_000883_050 Hb_000883_050 Hb_000086_070--Hb_000883_050 Hb_001383_060 Hb_001383_060 Hb_000086_070--Hb_001383_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
27.9136 8.44629 7.97853 12.7599 15.2431 33.7676
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
31.7205 46.4091 25.2698 7.80958 8.81594

CAGE analysis