Hb_018133_070

Information

Type -
Description -
Location Contig18133: 55775-57277
Sequence    

Annotation

kegg
ID rcu:RCOM_1509940
description ring finger protein, putative
nr
ID XP_012080022.1
description PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
swissprot
ID Q5EAE9
description RING-H2 finger protein ATL43 OS=Arabidopsis thaliana GN=ATL43 PE=2 SV=2
trembl
ID A0A067K4K2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_11443 PE=4 SV=1
Gene Ontology
ID GO:0046872
description ring-h2 finger protein atl43

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17622: 56021-57064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_070 0.0 - - PREDICTED: RING-H2 finger protein ATL43 [Jatropha curcas]
2 Hb_006133_020 0.1133220212 - - PREDICTED: DNA (cytosine-5)-methyltransferase DRM2 [Jatropha curcas]
3 Hb_010683_030 0.1238707805 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000032_360 0.1274660491 - - PREDICTED: NAD(P)H-quinone oxidoreductase subunit S, chloroplastic [Jatropha curcas]
5 Hb_000925_150 0.1287895235 - - PREDICTED: aluminum-activated malate transporter 8-like [Jatropha curcas]
6 Hb_003020_190 0.1296211559 - - PREDICTED: methylsterol monooxygenase 2-2 [Jatropha curcas]
7 Hb_047659_010 0.1361368143 - - conserved hypothetical protein [Ricinus communis]
8 Hb_011033_010 0.1361561244 - - ATP-binding cassette transporter, putative [Ricinus communis]
9 Hb_000932_110 0.1373699032 - - Root phototropism protein, putative [Ricinus communis]
10 Hb_000130_130 0.138392937 - - hypothetical protein POPTR_0001s40330g [Populus trichocarpa]
11 Hb_001862_050 0.1427223147 - - PREDICTED: lysine-rich arabinogalactan protein 18-like [Jatropha curcas]
12 Hb_008511_040 0.1442909472 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
13 Hb_005890_020 0.1447273421 - - putative plant disease resistance family protein [Populus trichocarpa]
14 Hb_001221_060 0.1448687512 - - PREDICTED: cycloeucalenol cycloisomerase [Jatropha curcas]
15 Hb_004586_040 0.1490153486 transcription factor TF Family: MIKC K-box region and MADS-box transcription factor family protein [Theobroma cacao]
16 Hb_081529_010 0.1506191442 - - unnamed protein product [Vitis vinifera]
17 Hb_010288_030 0.1521819519 - - PREDICTED: uncharacterized protein LOC105642607 [Jatropha curcas]
18 Hb_004447_050 0.1530535952 - - PREDICTED: high-light-induced protein, chloroplastic [Jatropha curcas]
19 Hb_000438_160 0.155560131 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000352_010 0.1596612798 - - PREDICTED: nudix hydrolase 13, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_018133_070 Hb_018133_070 Hb_006133_020 Hb_006133_020 Hb_018133_070--Hb_006133_020 Hb_010683_030 Hb_010683_030 Hb_018133_070--Hb_010683_030 Hb_000032_360 Hb_000032_360 Hb_018133_070--Hb_000032_360 Hb_000925_150 Hb_000925_150 Hb_018133_070--Hb_000925_150 Hb_003020_190 Hb_003020_190 Hb_018133_070--Hb_003020_190 Hb_047659_010 Hb_047659_010 Hb_018133_070--Hb_047659_010 Hb_008511_040 Hb_008511_040 Hb_006133_020--Hb_008511_040 Hb_006133_020--Hb_003020_190 Hb_001862_050 Hb_001862_050 Hb_006133_020--Hb_001862_050 Hb_000227_400 Hb_000227_400 Hb_006133_020--Hb_000227_400 Hb_001141_050 Hb_001141_050 Hb_006133_020--Hb_001141_050 Hb_000230_190 Hb_000230_190 Hb_006133_020--Hb_000230_190 Hb_010863_030 Hb_010863_030 Hb_010683_030--Hb_010863_030 Hb_004447_050 Hb_004447_050 Hb_010683_030--Hb_004447_050 Hb_010683_030--Hb_000032_360 Hb_005000_010 Hb_005000_010 Hb_010683_030--Hb_005000_010 Hb_004705_070 Hb_004705_070 Hb_010683_030--Hb_004705_070 Hb_000130_130 Hb_000130_130 Hb_000032_360--Hb_000130_130 Hb_000032_360--Hb_004447_050 Hb_003581_230 Hb_003581_230 Hb_000032_360--Hb_003581_230 Hb_001141_350 Hb_001141_350 Hb_000032_360--Hb_001141_350 Hb_001221_060 Hb_001221_060 Hb_000032_360--Hb_001221_060 Hb_002374_470 Hb_002374_470 Hb_000925_150--Hb_002374_470 Hb_012055_080 Hb_012055_080 Hb_000925_150--Hb_012055_080 Hb_005890_020 Hb_005890_020 Hb_000925_150--Hb_005890_020 Hb_004115_010 Hb_004115_010 Hb_000925_150--Hb_004115_010 Hb_011033_010 Hb_011033_010 Hb_000925_150--Hb_011033_010 Hb_010288_030 Hb_010288_030 Hb_003020_190--Hb_010288_030 Hb_071674_010 Hb_071674_010 Hb_003020_190--Hb_071674_010 Hb_003020_190--Hb_001862_050 Hb_000991_030 Hb_000991_030 Hb_003020_190--Hb_000991_030 Hb_007943_180 Hb_007943_180 Hb_003020_190--Hb_007943_180 Hb_047659_010--Hb_000991_030 Hb_047659_010--Hb_001862_050 Hb_169893_010 Hb_169893_010 Hb_047659_010--Hb_169893_010 Hb_047659_010--Hb_003020_190 Hb_047659_010--Hb_006133_020 Hb_008686_010 Hb_008686_010 Hb_047659_010--Hb_008686_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.157101 0.215391 3.29905 2.31702 0.251421 0.220944
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0934718 0.0245123 0.0460572 0.146761 1.33342

CAGE analysis