Hb_018133_090

Information

Type -
Description -
Location Contig18133: 63141-71266
Sequence    

Annotation

kegg
ID rcu:RCOM_1509960
description hypothetical protein
nr
ID XP_002511368.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RAZ3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1509960 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17623: 61067-65091 , PASA_asmbl_17624: 61080-63180 , PASA_asmbl_17625: 65788-67955 , PASA_asmbl_17626: 68427-70791
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_090 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000337_050 0.0809949081 - - PREDICTED: chloroplast envelope membrane protein [Jatropha curcas]
3 Hb_001049_110 0.0827838413 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
4 Hb_011716_130 0.0930596142 - - PREDICTED: probable acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, mitochondrial isoform X5 [Populus euphratica]
5 Hb_015941_020 0.093816224 - - -
6 Hb_002811_130 0.094126206 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
7 Hb_103118_010 0.0954853138 - - PREDICTED: uncharacterized protein LOC105643231 [Jatropha curcas]
8 Hb_000289_110 0.0958284086 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
9 Hb_000614_220 0.0961811802 - - PREDICTED: uncharacterized protein LOC105644756 [Jatropha curcas]
10 Hb_011457_050 0.0997689966 - - PREDICTED: TP53-regulating kinase [Jatropha curcas]
11 Hb_000061_210 0.1006018674 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_000853_190 0.1012621941 - - mitochondrial carrier protein, putative [Ricinus communis]
13 Hb_003768_030 0.1016689026 - - PREDICTED: ribosome biogenesis protein WDR12 homolog isoform X1 [Jatropha curcas]
14 Hb_002408_020 0.1031427871 - - PREDICTED: choline monooxygenase, chloroplastic isoform X4 [Jatropha curcas]
15 Hb_000172_580 0.1036587599 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_001366_180 0.1050190468 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
17 Hb_011360_070 0.1054261516 - - PREDICTED: zinc finger RNA-binding protein [Jatropha curcas]
18 Hb_082609_010 0.1073060234 - - PREDICTED: uncharacterized protein LOC105644299 [Jatropha curcas]
19 Hb_027654_060 0.1073145523 - - RecName: Full=Probable pyridoxal 5'-phosphate synthase subunit PDX1; Short=PLP synthase subunit PDX1; AltName: Full=Ethylene-inducible protein HEVER [Hevea brasiliensis]
20 Hb_005237_050 0.1081677183 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105630924 [Jatropha curcas]

Gene co-expression network

sample Hb_018133_090 Hb_018133_090 Hb_000337_050 Hb_000337_050 Hb_018133_090--Hb_000337_050 Hb_001049_110 Hb_001049_110 Hb_018133_090--Hb_001049_110 Hb_011716_130 Hb_011716_130 Hb_018133_090--Hb_011716_130 Hb_015941_020 Hb_015941_020 Hb_018133_090--Hb_015941_020 Hb_002811_130 Hb_002811_130 Hb_018133_090--Hb_002811_130 Hb_103118_010 Hb_103118_010 Hb_018133_090--Hb_103118_010 Hb_000289_110 Hb_000289_110 Hb_000337_050--Hb_000289_110 Hb_003086_080 Hb_003086_080 Hb_000337_050--Hb_003086_080 Hb_001366_180 Hb_001366_180 Hb_000337_050--Hb_001366_180 Hb_005144_050 Hb_005144_050 Hb_000337_050--Hb_005144_050 Hb_003020_260 Hb_003020_260 Hb_000337_050--Hb_003020_260 Hb_001049_110--Hb_015941_020 Hb_000061_210 Hb_000061_210 Hb_001049_110--Hb_000061_210 Hb_005686_090 Hb_005686_090 Hb_001049_110--Hb_005686_090 Hb_000295_080 Hb_000295_080 Hb_001049_110--Hb_000295_080 Hb_000556_090 Hb_000556_090 Hb_001049_110--Hb_000556_090 Hb_005847_060 Hb_005847_060 Hb_011716_130--Hb_005847_060 Hb_011716_130--Hb_002811_130 Hb_000815_070 Hb_000815_070 Hb_011716_130--Hb_000815_070 Hb_000224_160 Hb_000224_160 Hb_011716_130--Hb_000224_160 Hb_002600_090 Hb_002600_090 Hb_011716_130--Hb_002600_090 Hb_012022_150 Hb_012022_150 Hb_011716_130--Hb_012022_150 Hb_001671_010 Hb_001671_010 Hb_015941_020--Hb_001671_010 Hb_010883_040 Hb_010883_040 Hb_015941_020--Hb_010883_040 Hb_015941_020--Hb_005686_090 Hb_000883_060 Hb_000883_060 Hb_015941_020--Hb_000883_060 Hb_002811_130--Hb_000289_110 Hb_002014_030 Hb_002014_030 Hb_002811_130--Hb_002014_030 Hb_002811_130--Hb_005847_060 Hb_006274_030 Hb_006274_030 Hb_002811_130--Hb_006274_030 Hb_002811_130--Hb_000061_210 Hb_103118_010--Hb_000061_210 Hb_012675_050 Hb_012675_050 Hb_103118_010--Hb_012675_050 Hb_000861_020 Hb_000861_020 Hb_103118_010--Hb_000861_020 Hb_003688_150 Hb_003688_150 Hb_103118_010--Hb_003688_150 Hb_002408_020 Hb_002408_020 Hb_103118_010--Hb_002408_020 Hb_000046_050 Hb_000046_050 Hb_103118_010--Hb_000046_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.38158 1.49391 3.58265 3.72114 3.67581 3.84692
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.62084 8.03764 6.71565 3.3039 9.63979

CAGE analysis