Hb_018133_120

Information

Type transcription factor
Description TF Family: HB
Location Contig18133: 95265-111254
Sequence    

Annotation

kegg
ID rcu:RCOM_1510310
description homeobox protein knotted-1, putative
nr
ID XP_002511373.1
description homeobox protein knotted-1, putative [Ricinus communis]
swissprot
ID Q84JS6
description Homeobox protein knotted-1-like 6 OS=Arabidopsis thaliana GN=KNAT6 PE=1 SV=1
trembl
ID B9RAZ8
description Homeobox protein knotted-1, putative OS=Ricinus communis GN=RCOM_1510310 PE=4 SV=1
Gene Ontology
ID GO:0005634
description homeobox protein knotted-1-like 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018133_120 0.0 transcription factor TF Family: HB homeobox protein knotted-1, putative [Ricinus communis]
2 Hb_001186_060 0.1379783808 - - -
3 Hb_005214_110 0.1396759626 - - -
4 Hb_001158_030 0.1459213541 - - -
5 Hb_011716_040 0.1514532691 - - -
6 Hb_011671_330 0.1540993576 transcription factor TF Family: MYB-related PREDICTED: protein REVEILLE 4 [Jatropha curcas]
7 Hb_000371_110 0.1559037955 - - -
8 Hb_004586_190 0.1592217644 - - PREDICTED: protein CutA, chloroplastic [Jatropha curcas]
9 Hb_007245_090 0.160294908 - - -
10 Hb_027556_010 0.1604697746 - - -
11 Hb_001817_180 0.1634209918 - - PREDICTED: RING-H2 finger protein ATL47 [Jatropha curcas]
12 Hb_001514_200 0.1636633776 - - PREDICTED: F-box/FBD/LRR-repeat protein At1g13570-like [Jatropha curcas]
13 Hb_000958_010 0.1653100591 - - conserved hypothetical protein [Ricinus communis]
14 Hb_001633_110 0.167558437 - - PREDICTED: pentatricopeptide repeat-containing protein At3g26782, mitochondrial [Jatropha curcas]
15 Hb_006189_010 0.1696718338 - - -
16 Hb_001930_070 0.1749149445 - - -
17 Hb_017987_090 0.1774549967 transcription factor TF Family: HB PREDICTED: homeobox protein knotted-1-like 2 [Jatropha curcas]
18 Hb_006499_010 0.1775472565 - - -
19 Hb_011472_040 0.1786248944 - - PREDICTED: clathrin light chain 3 [Jatropha curcas]
20 Hb_000339_070 0.1799183435 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Populus euphratica]

Gene co-expression network

sample Hb_018133_120 Hb_018133_120 Hb_001186_060 Hb_001186_060 Hb_018133_120--Hb_001186_060 Hb_005214_110 Hb_005214_110 Hb_018133_120--Hb_005214_110 Hb_001158_030 Hb_001158_030 Hb_018133_120--Hb_001158_030 Hb_011716_040 Hb_011716_040 Hb_018133_120--Hb_011716_040 Hb_011671_330 Hb_011671_330 Hb_018133_120--Hb_011671_330 Hb_000371_110 Hb_000371_110 Hb_018133_120--Hb_000371_110 Hb_001930_070 Hb_001930_070 Hb_001186_060--Hb_001930_070 Hb_001186_060--Hb_000371_110 Hb_006499_010 Hb_006499_010 Hb_001186_060--Hb_006499_010 Hb_000163_290 Hb_000163_290 Hb_001186_060--Hb_000163_290 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_000033_050 Hb_000033_050 Hb_001186_060--Hb_000033_050 Hb_007245_090 Hb_007245_090 Hb_005214_110--Hb_007245_090 Hb_005214_110--Hb_001930_070 Hb_005214_110--Hb_001158_030 Hb_000339_070 Hb_000339_070 Hb_005214_110--Hb_000339_070 Hb_000014_100 Hb_000014_100 Hb_005214_110--Hb_000014_100 Hb_005214_110--Hb_001186_060 Hb_027556_010 Hb_027556_010 Hb_001158_030--Hb_027556_010 Hb_001158_030--Hb_001186_060 Hb_001158_030--Hb_011716_040 Hb_001158_030--Hb_001930_070 Hb_015456_020 Hb_015456_020 Hb_001158_030--Hb_015456_020 Hb_011716_040--Hb_027556_010 Hb_011716_040--Hb_000033_050 Hb_011716_040--Hb_006499_010 Hb_011716_040--Hb_001186_060 Hb_011716_040--Hb_000014_100 Hb_006478_110 Hb_006478_110 Hb_011671_330--Hb_006478_110 Hb_000413_130 Hb_000413_130 Hb_011671_330--Hb_000413_130 Hb_029866_130 Hb_029866_130 Hb_011671_330--Hb_029866_130 Hb_029281_010 Hb_029281_010 Hb_011671_330--Hb_029281_010 Hb_001633_110 Hb_001633_110 Hb_011671_330--Hb_001633_110 Hb_004931_040 Hb_004931_040 Hb_011671_330--Hb_004931_040 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000117_040 Hb_000117_040 Hb_000371_110--Hb_000117_040 Hb_000371_110--Hb_000163_290 Hb_000371_110--Hb_006499_010 Hb_000138_040 Hb_000138_040 Hb_000371_110--Hb_000138_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
8.45593 6.55479 0 0.0153877 17.6108 9.74233
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.32064 9.26237 7.61128 3.65997 0

CAGE analysis