Hb_018134_010

Information

Type transcription factor
Description TF Family: Jumonji
Location Contig18134: 19931-28165
Sequence    

Annotation

kegg
ID pop:POPTR_0003s09480g
description POPTRDRAFT_414287; hypothetical protein
nr
ID XP_012081065.1
description PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
swissprot
ID Q336N8
description Lysine-specific demethylase JMJ706 OS=Oryza sativa subsp. japonica GN=JMJ706 PE=2 SV=1
trembl
ID A0A067K2E3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17120 PE=4 SV=1
Gene Ontology
ID GO:0016020
description lysine-specific demethylase jmj706-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17636: 21967-28104
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018134_010 0.0 transcription factor TF Family: Jumonji PREDICTED: lysine-specific demethylase JMJ706 isoform X1 [Jatropha curcas]
2 Hb_008019_010 0.0639811424 - - PREDICTED: nitrile-specifier protein 5-like [Jatropha curcas]
3 Hb_004040_010 0.0801391268 - - hypothetical protein POPTR_0019s14250g [Populus trichocarpa]
4 Hb_054926_010 0.0932145168 - - glutamate receptor 2 plant, putative [Ricinus communis]
5 Hb_111997_010 0.0946015441 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
6 Hb_001677_170 0.1009621955 - - hypothetical protein M569_03661, partial [Genlisea aurea]
7 Hb_059318_010 0.104359581 - - glutamate receptor 2 plant, putative [Ricinus communis]
8 Hb_007632_230 0.1052254327 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
9 Hb_004553_040 0.106886533 - - PREDICTED: protein YLS9-like [Jatropha curcas]
10 Hb_006188_020 0.1075683314 - - PREDICTED: uncharacterized protein LOC105646403 [Jatropha curcas]
11 Hb_008406_060 0.1091061604 - - PREDICTED: non-specific lipid-transfer protein 1-like [Jatropha curcas]
12 Hb_000243_290 0.1096154584 - - plastidic aldolase family protein [Populus trichocarpa]
13 Hb_074966_010 0.1136539047 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
14 Hb_001221_070 0.114016403 - - PREDICTED: calcium-binding protein CML38-like [Jatropha curcas]
15 Hb_001366_390 0.1154106376 - - PREDICTED: uncharacterized protein LOC105642722 [Jatropha curcas]
16 Hb_005890_010 0.125641126 - - PREDICTED: root phototropism protein 2 [Jatropha curcas]
17 Hb_011794_050 0.1256751018 - - transcription factor, putative [Ricinus communis]
18 Hb_000343_050 0.1257280408 - - conserved hypothetical protein [Ricinus communis]
19 Hb_002477_200 0.1258085908 - - PREDICTED: uncharacterized protein LOC105631678 [Jatropha curcas]
20 Hb_001926_070 0.1266751651 - - hypothetical protein JCGZ_21510 [Jatropha curcas]

Gene co-expression network

sample Hb_018134_010 Hb_018134_010 Hb_008019_010 Hb_008019_010 Hb_018134_010--Hb_008019_010 Hb_004040_010 Hb_004040_010 Hb_018134_010--Hb_004040_010 Hb_054926_010 Hb_054926_010 Hb_018134_010--Hb_054926_010 Hb_111997_010 Hb_111997_010 Hb_018134_010--Hb_111997_010 Hb_001677_170 Hb_001677_170 Hb_018134_010--Hb_001677_170 Hb_059318_010 Hb_059318_010 Hb_018134_010--Hb_059318_010 Hb_008019_010--Hb_054926_010 Hb_008019_010--Hb_004040_010 Hb_008019_010--Hb_059318_010 Hb_008019_010--Hb_111997_010 Hb_000103_370 Hb_000103_370 Hb_008019_010--Hb_000103_370 Hb_004040_010--Hb_054926_010 Hb_011794_050 Hb_011794_050 Hb_004040_010--Hb_011794_050 Hb_000319_010 Hb_000319_010 Hb_004040_010--Hb_000319_010 Hb_000878_090 Hb_000878_090 Hb_004040_010--Hb_000878_090 Hb_007632_230 Hb_007632_230 Hb_054926_010--Hb_007632_230 Hb_054926_010--Hb_000103_370 Hb_007123_010 Hb_007123_010 Hb_054926_010--Hb_007123_010 Hb_074966_010 Hb_074966_010 Hb_111997_010--Hb_074966_010 Hb_006188_020 Hb_006188_020 Hb_111997_010--Hb_006188_020 Hb_111997_010--Hb_001677_170 Hb_001606_010 Hb_001606_010 Hb_111997_010--Hb_001606_010 Hb_111997_010--Hb_059318_010 Hb_001926_070 Hb_001926_070 Hb_111997_010--Hb_001926_070 Hb_001677_170--Hb_001926_070 Hb_000343_050 Hb_000343_050 Hb_001677_170--Hb_000343_050 Hb_000031_320 Hb_000031_320 Hb_001677_170--Hb_000031_320 Hb_001677_170--Hb_006188_020 Hb_001677_170--Hb_001606_010 Hb_059318_010--Hb_074966_010 Hb_032731_010 Hb_032731_010 Hb_059318_010--Hb_032731_010 Hb_001926_020 Hb_001926_020 Hb_059318_010--Hb_001926_020 Hb_003777_120 Hb_003777_120 Hb_059318_010--Hb_003777_120 Hb_000049_030 Hb_000049_030 Hb_059318_010--Hb_000049_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00548722 7.82716 12.9993 7.55204 0.0157606 0.0146212
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0124358 0.0587181 0.0187627 0.275372 8.35171

CAGE analysis