Hb_018202_050

Information

Type -
Description -
Location Contig18202: 34817-36698
Sequence    

Annotation

kegg
ID rcu:RCOM_1063210
description tRNA, putative (EC:2.1.1.36)
nr
ID XP_012072531.1
description PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
swissprot
ID Q80XC2
description tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A OS=Mus musculus GN=Trmt61a PE=2 SV=1
trembl
ID B9S623
description tRNA, putative OS=Ricinus communis GN=RCOM_1063210 PE=4 SV=1
Gene Ontology
ID GO:0031515
description trna (adenine -n )-methyltransferase catalytic subunit trmt61a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17716: 34775-35207 , PASA_asmbl_17717: 35477-36650 , PASA_asmbl_17718: 37076-37422
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018202_050 0.0 - - PREDICTED: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRMT61A [Jatropha curcas]
2 Hb_003894_040 0.0945207066 - - nucleotide binding protein, putative [Ricinus communis]
3 Hb_000347_270 0.0971220529 - - PREDICTED: uncharacterized protein LOC105631376 [Jatropha curcas]
4 Hb_001369_350 0.0993934236 - - Cisplatin resistance-associated overexpressed protein, putative [Ricinus communis]
5 Hb_002092_100 0.1093006498 - - PREDICTED: actin-related protein 4-like [Jatropha curcas]
6 Hb_002902_020 0.1122725797 - - PREDICTED: uncharacterized protein LOC105639827 [Jatropha curcas]
7 Hb_011918_050 0.1128406243 - - -
8 Hb_006508_030 0.1144811962 - - PREDICTED: CDPK-related kinase 1-like [Jatropha curcas]
9 Hb_000156_160 0.1148952124 - - PREDICTED: urease accessory protein G [Jatropha curcas]
10 Hb_001508_020 0.1162598733 - - myosin vIII, putative [Ricinus communis]
11 Hb_003638_010 0.1195386351 transcription factor TF Family: ARID PREDICTED: lysine-specific demethylase 5B isoform X2 [Jatropha curcas]
12 Hb_005053_010 0.1196611975 - - PREDICTED: protease Do-like 9 [Jatropha curcas]
13 Hb_000139_230 0.1199893578 transcription factor TF Family: SNF2 PREDICTED: probable ATP-dependent DNA helicase CHR12 [Jatropha curcas]
14 Hb_004701_050 0.1215804408 - - alpha1 family protein [Populus trichocarpa]
15 Hb_002681_170 0.1219269018 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
16 Hb_000879_160 0.1223855262 - - PREDICTED: F-box protein At3g12350 isoform X1 [Jatropha curcas]
17 Hb_006573_160 0.1226635221 - - PREDICTED: dnaJ protein ERDJ2A-like [Jatropha curcas]
18 Hb_016734_090 0.1229885496 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
19 Hb_000116_510 0.1238624351 - - PREDICTED: RNA-binding protein 24-A-like isoform X2 [Jatropha curcas]
20 Hb_000031_280 0.1260092003 - - -

Gene co-expression network

sample Hb_018202_050 Hb_018202_050 Hb_003894_040 Hb_003894_040 Hb_018202_050--Hb_003894_040 Hb_000347_270 Hb_000347_270 Hb_018202_050--Hb_000347_270 Hb_001369_350 Hb_001369_350 Hb_018202_050--Hb_001369_350 Hb_002092_100 Hb_002092_100 Hb_018202_050--Hb_002092_100 Hb_002902_020 Hb_002902_020 Hb_018202_050--Hb_002902_020 Hb_011918_050 Hb_011918_050 Hb_018202_050--Hb_011918_050 Hb_002805_060 Hb_002805_060 Hb_003894_040--Hb_002805_060 Hb_000599_170 Hb_000599_170 Hb_003894_040--Hb_000599_170 Hb_027380_030 Hb_027380_030 Hb_003894_040--Hb_027380_030 Hb_001301_220 Hb_001301_220 Hb_003894_040--Hb_001301_220 Hb_006915_020 Hb_006915_020 Hb_003894_040--Hb_006915_020 Hb_000270_160 Hb_000270_160 Hb_000347_270--Hb_000270_160 Hb_004701_050 Hb_004701_050 Hb_000347_270--Hb_004701_050 Hb_002092_110 Hb_002092_110 Hb_000347_270--Hb_002092_110 Hb_002681_170 Hb_002681_170 Hb_000347_270--Hb_002681_170 Hb_000384_080 Hb_000384_080 Hb_000347_270--Hb_000384_080 Hb_001178_150 Hb_001178_150 Hb_001369_350--Hb_001178_150 Hb_000935_090 Hb_000935_090 Hb_001369_350--Hb_000935_090 Hb_010925_020 Hb_010925_020 Hb_001369_350--Hb_010925_020 Hb_002307_350 Hb_002307_350 Hb_001369_350--Hb_002307_350 Hb_000120_620 Hb_000120_620 Hb_001369_350--Hb_000120_620 Hb_000025_650 Hb_000025_650 Hb_001369_350--Hb_000025_650 Hb_000156_160 Hb_000156_160 Hb_002092_100--Hb_000156_160 Hb_005053_010 Hb_005053_010 Hb_002092_100--Hb_005053_010 Hb_002092_100--Hb_002805_060 Hb_002092_100--Hb_027380_030 Hb_016734_090 Hb_016734_090 Hb_002092_100--Hb_016734_090 Hb_002092_100--Hb_002681_170 Hb_000230_430 Hb_000230_430 Hb_002902_020--Hb_000230_430 Hb_001231_030 Hb_001231_030 Hb_002902_020--Hb_001231_030 Hb_096819_010 Hb_096819_010 Hb_002902_020--Hb_096819_010 Hb_000345_490 Hb_000345_490 Hb_002902_020--Hb_000345_490 Hb_002282_060 Hb_002282_060 Hb_002902_020--Hb_002282_060 Hb_000264_070 Hb_000264_070 Hb_002902_020--Hb_000264_070 Hb_011918_050--Hb_016734_090 Hb_002739_130 Hb_002739_130 Hb_011918_050--Hb_002739_130 Hb_001269_200 Hb_001269_200 Hb_011918_050--Hb_001269_200 Hb_000023_320 Hb_000023_320 Hb_011918_050--Hb_000023_320 Hb_005288_080 Hb_005288_080 Hb_011918_050--Hb_005288_080 Hb_005054_190 Hb_005054_190 Hb_011918_050--Hb_005054_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.93444 4.68714 4.77891 3.84129 5.08396 5.35104
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.66628 1.03473 0.319707 2.49014 3.3423

CAGE analysis