Hb_018272_020

Information

Type -
Description -
Location Contig18272: 14861-17369
Sequence    

Annotation

kegg
ID rcu:RCOM_1276740
description chaperone binding protein, putative
nr
ID XP_012079145.1
description PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067LLZ3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17402 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17797: 16199-39495
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018272_020 0.0 - - PREDICTED: small glutamine-rich tetratricopeptide repeat-containing protein alpha [Jatropha curcas]
2 Hb_002014_030 0.080571439 - - hypothetical protein JCGZ_07251 [Jatropha curcas]
3 Hb_003020_260 0.0839268045 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
4 Hb_001366_180 0.0881941367 - - PREDICTED: translocase of chloroplast 33, chloroplastic-like [Jatropha curcas]
5 Hb_000479_250 0.0939759116 - - PREDICTED: uncharacterized protein LOC105644121 [Jatropha curcas]
6 Hb_005976_080 0.0946398595 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
7 Hb_002758_010 0.0952627562 - - PREDICTED: ribonuclease II, chloroplastic/mitochondrial [Populus euphratica]
8 Hb_005144_050 0.0961101403 - - PREDICTED: S-adenosylmethionine synthase 1 isoform X2 [Vitis vinifera]
9 Hb_006274_030 0.1002850101 - - F-box and wd40 domain protein, putative [Ricinus communis]
10 Hb_109000_020 0.1016258558 - - PREDICTED: uncharacterized protein LOC105633730 [Jatropha curcas]
11 Hb_000172_580 0.1023018288 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
12 Hb_185255_010 0.1035883916 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 11-like [Jatropha curcas]
13 Hb_025098_010 0.1040362621 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X2 [Jatropha curcas]
14 Hb_001369_750 0.1048146663 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
15 Hb_027073_020 0.1051295575 - - PREDICTED: testis-expressed sequence 10 protein isoform X2 [Jatropha curcas]
16 Hb_001049_110 0.105143334 - - PREDICTED: translation initiation factor IF-2, mitochondrial isoform X1 [Jatropha curcas]
17 Hb_000768_200 0.1071665434 - - hypothetical protein POPTR_0013s06910g [Populus trichocarpa]
18 Hb_000289_110 0.1081269619 - - PREDICTED: cysteine synthase-like [Musa acuminata subsp. malaccensis]
19 Hb_028697_010 0.1083043965 - - PREDICTED: protein yippee-like At4g27745 [Jatropha curcas]
20 Hb_000696_330 0.1085345572 - - PREDICTED: uncharacterized protein LOC105647254 [Jatropha curcas]

Gene co-expression network

sample Hb_018272_020 Hb_018272_020 Hb_002014_030 Hb_002014_030 Hb_018272_020--Hb_002014_030 Hb_003020_260 Hb_003020_260 Hb_018272_020--Hb_003020_260 Hb_001366_180 Hb_001366_180 Hb_018272_020--Hb_001366_180 Hb_000479_250 Hb_000479_250 Hb_018272_020--Hb_000479_250 Hb_005976_080 Hb_005976_080 Hb_018272_020--Hb_005976_080 Hb_002758_010 Hb_002758_010 Hb_018272_020--Hb_002758_010 Hb_002014_030--Hb_001366_180 Hb_006274_030 Hb_006274_030 Hb_002014_030--Hb_006274_030 Hb_000289_110 Hb_000289_110 Hb_002014_030--Hb_000289_110 Hb_017987_030 Hb_017987_030 Hb_002014_030--Hb_017987_030 Hb_002811_130 Hb_002811_130 Hb_002014_030--Hb_002811_130 Hb_003020_260--Hb_000289_110 Hb_003020_260--Hb_002014_030 Hb_000107_150 Hb_000107_150 Hb_003020_260--Hb_000107_150 Hb_003020_260--Hb_001366_180 Hb_025098_010 Hb_025098_010 Hb_003020_260--Hb_025098_010 Hb_001366_180--Hb_006274_030 Hb_005144_050 Hb_005144_050 Hb_001366_180--Hb_005144_050 Hb_001366_180--Hb_000289_110 Hb_001366_180--Hb_000479_250 Hb_006478_020 Hb_006478_020 Hb_001366_180--Hb_006478_020 Hb_009328_020 Hb_009328_020 Hb_000479_250--Hb_009328_020 Hb_000479_250--Hb_006274_030 Hb_001369_750 Hb_001369_750 Hb_000479_250--Hb_001369_750 Hb_006275_070 Hb_006275_070 Hb_000479_250--Hb_006275_070 Hb_003153_010 Hb_003153_010 Hb_000479_250--Hb_003153_010 Hb_015675_040 Hb_015675_040 Hb_005976_080--Hb_015675_040 Hb_004159_020 Hb_004159_020 Hb_005976_080--Hb_004159_020 Hb_000656_010 Hb_000656_010 Hb_005976_080--Hb_000656_010 Hb_003878_150 Hb_003878_150 Hb_005976_080--Hb_003878_150 Hb_027073_020 Hb_027073_020 Hb_005976_080--Hb_027073_020 Hb_001195_400 Hb_001195_400 Hb_005976_080--Hb_001195_400 Hb_000130_320 Hb_000130_320 Hb_002758_010--Hb_000130_320 Hb_002205_230 Hb_002205_230 Hb_002758_010--Hb_002205_230 Hb_005731_160 Hb_005731_160 Hb_002758_010--Hb_005731_160 Hb_001936_090 Hb_001936_090 Hb_002758_010--Hb_001936_090 Hb_005253_030 Hb_005253_030 Hb_002758_010--Hb_005253_030 Hb_001589_010 Hb_001589_010 Hb_002758_010--Hb_001589_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.0471 0.793479 0.964834 1.64201 0.863936 1.36783
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.02407 2.2466 1.16641 1.2118 2.59201

CAGE analysis