Hb_018279_020

Information

Type -
Description -
Location Contig18279: 3800-4075
Sequence    

Annotation

kegg
ID sly:101253376
description DNA-binding protein HEXBP-like
nr
ID KDP39400.1
description hypothetical protein JCGZ_03682 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L4H3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03682 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018279_020 0.0 - - hypothetical protein JCGZ_03682 [Jatropha curcas]
2 Hb_001862_120 0.1784761618 - - PREDICTED: aspartic proteinase-like protein 2 [Jatropha curcas]
3 Hb_002226_040 0.1879687611 - - PREDICTED: uncharacterized protein LOC105641318 isoform X2 [Jatropha curcas]
4 Hb_001832_150 0.1944588003 - - PREDICTED: uncharacterized protein LOC105637882 [Jatropha curcas]
5 Hb_000224_200 0.1952339735 - - PREDICTED: uncharacterized protein LOC105640874 [Jatropha curcas]
6 Hb_003206_120 0.1971862738 - - PREDICTED: glutamate decarboxylase 5-like [Jatropha curcas]
7 Hb_000003_540 0.1991863638 - - PREDICTED: homeobox-leucine zipper protein ATHB-15 [Jatropha curcas]
8 Hb_001288_030 0.1999033248 - - -
9 Hb_116608_010 0.2059959252 transcription factor TF Family: NF-YC DNA binding protein, putative [Ricinus communis]
10 Hb_003106_220 0.2084372526 - - PREDICTED: succinate dehydrogenase subunit 7B, mitochondrial-like isoform X1 [Jatropha curcas]
11 Hb_000696_160 0.2142312913 - - PREDICTED: SKP1-like protein 1B [Jatropha curcas]
12 Hb_005784_040 0.2158960604 - - PREDICTED: uncharacterized protein LOC105645160 isoform X1 [Jatropha curcas]
13 Hb_010815_030 0.2160271903 - - PREDICTED: (-)-germacrene D synthase [Vitis vinifera]
14 Hb_000162_220 0.2181467655 - - nodulin family protein [Populus trichocarpa]
15 Hb_000003_720 0.2183299425 - - hypothetical protein POPTR_0003s04720g [Populus trichocarpa]
16 Hb_017987_050 0.2184197783 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
17 Hb_001386_110 0.22244409 - - PREDICTED: LOW QUALITY PROTEIN: putative fasciclin-like arabinogalactan protein 20 [Populus euphratica]
18 Hb_001269_610 0.225734469 - - Chaperone protein dnaJ 8, chloroplast precursor, putative [Ricinus communis]
19 Hb_009976_010 0.2264703251 - - PREDICTED: uncharacterized protein LOC105630216 [Jatropha curcas]
20 Hb_139294_010 0.2266073049 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_018279_020 Hb_018279_020 Hb_001862_120 Hb_001862_120 Hb_018279_020--Hb_001862_120 Hb_002226_040 Hb_002226_040 Hb_018279_020--Hb_002226_040 Hb_001832_150 Hb_001832_150 Hb_018279_020--Hb_001832_150 Hb_000224_200 Hb_000224_200 Hb_018279_020--Hb_000224_200 Hb_003206_120 Hb_003206_120 Hb_018279_020--Hb_003206_120 Hb_000003_540 Hb_000003_540 Hb_018279_020--Hb_000003_540 Hb_001386_110 Hb_001386_110 Hb_001862_120--Hb_001386_110 Hb_000676_140 Hb_000676_140 Hb_001862_120--Hb_000676_140 Hb_001221_560 Hb_001221_560 Hb_001862_120--Hb_001221_560 Hb_000627_260 Hb_000627_260 Hb_001862_120--Hb_000627_260 Hb_001623_100 Hb_001623_100 Hb_001862_120--Hb_001623_100 Hb_010815_030 Hb_010815_030 Hb_002226_040--Hb_010815_030 Hb_000948_220 Hb_000948_220 Hb_002226_040--Hb_000948_220 Hb_000030_200 Hb_000030_200 Hb_002226_040--Hb_000030_200 Hb_000175_320 Hb_000175_320 Hb_002226_040--Hb_000175_320 Hb_007120_090 Hb_007120_090 Hb_002226_040--Hb_007120_090 Hb_001288_030 Hb_001288_030 Hb_002226_040--Hb_001288_030 Hb_001832_150--Hb_000224_200 Hb_001832_150--Hb_002226_040 Hb_182005_010 Hb_182005_010 Hb_001832_150--Hb_182005_010 Hb_001832_150--Hb_001862_120 Hb_000465_510 Hb_000465_510 Hb_001832_150--Hb_000465_510 Hb_014783_010 Hb_014783_010 Hb_000224_200--Hb_014783_010 Hb_002809_130 Hb_002809_130 Hb_000224_200--Hb_002809_130 Hb_000167_060 Hb_000167_060 Hb_000224_200--Hb_000167_060 Hb_019249_010 Hb_019249_010 Hb_000224_200--Hb_019249_010 Hb_003371_180 Hb_003371_180 Hb_000224_200--Hb_003371_180 Hb_002900_160 Hb_002900_160 Hb_000224_200--Hb_002900_160 Hb_003206_120--Hb_000224_200 Hb_000003_080 Hb_000003_080 Hb_003206_120--Hb_000003_080 Hb_005288_190 Hb_005288_190 Hb_003206_120--Hb_005288_190 Hb_001842_100 Hb_001842_100 Hb_003206_120--Hb_001842_100 Hb_001416_010 Hb_001416_010 Hb_003206_120--Hb_001416_010 Hb_001143_130 Hb_001143_130 Hb_003206_120--Hb_001143_130 Hb_005784_040 Hb_005784_040 Hb_000003_540--Hb_005784_040 Hb_002631_280 Hb_002631_280 Hb_000003_540--Hb_002631_280 Hb_000670_050 Hb_000670_050 Hb_000003_540--Hb_000670_050 Hb_000245_080 Hb_000245_080 Hb_000003_540--Hb_000245_080 Hb_002344_130 Hb_002344_130 Hb_000003_540--Hb_002344_130 Hb_181385_010 Hb_181385_010 Hb_000003_540--Hb_181385_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.64534 2.84844 0.752033 4.53974 1.80224 0.387825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.66786 5.89782 0.500093 0.860092 1.6203

CAGE analysis