Hb_018283_010

Information

Type -
Description -
Location Contig18283: 418-2514
Sequence    

Annotation

kegg
ID vvi:100854167
description uncharacterized LOC100854167
nr
ID CAN59929.1
description hypothetical protein VITISV_023498 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BK51
description Putative uncharacterized protein (Fragment) OS=Vitis vinifera GN=VITISV_023498 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018283_010 0.0 - - hypothetical protein VITISV_023498 [Vitis vinifera]
2 Hb_080126_010 0.0089361006 transcription factor TF Family: FAR1 hypothetical protein MIMGU_mgv1a025104mg, partial [Erythranthe guttata]
3 Hb_127361_010 0.0092760956 - - PREDICTED: terpene synthase 10-like [Jatropha curcas]
4 Hb_055002_010 0.0146503159 - - PREDICTED: uncharacterized protein LOC104907627 [Beta vulgaris subsp. vulgaris]
5 Hb_049490_010 0.0181994596 - - hypothetical protein VITISV_013805 [Vitis vinifera]
6 Hb_005352_020 0.0252811114 - - -
7 Hb_007524_040 0.0304037019 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101511096 [Cicer arietinum]
8 Hb_000917_020 0.0305794161 - - polyprotein [Citrus endogenous pararetrovirus]
9 Hb_001255_070 0.0312407679 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
10 Hb_003908_010 0.0320133618 - - polyprotein [Oryza australiensis]
11 Hb_005300_050 0.0323050902 - - hypothetical protein VITISV_001308 [Vitis vinifera]
12 Hb_004987_050 0.0459453894 - - -
13 Hb_003898_010 0.0575737579 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
14 Hb_010523_020 0.0581709367 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_002281_060 0.0604019904 - - PREDICTED: uncharacterized protein LOC104877351 [Vitis vinifera]
16 Hb_001115_060 0.0613027472 - - PREDICTED: uncharacterized protein LOC104602709 [Nelumbo nucifera]
17 Hb_000668_030 0.0617782208 - - -
18 Hb_000789_210 0.0635073657 - - PREDICTED: nudix hydrolase 8-like isoform X1 [Jatropha curcas]
19 Hb_000051_100 0.0647881502 - - hypothetical protein MIMGU_mgv1a025286mg [Erythranthe guttata]
20 Hb_004984_090 0.0683230585 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]

Gene co-expression network

sample Hb_018283_010 Hb_018283_010 Hb_080126_010 Hb_080126_010 Hb_018283_010--Hb_080126_010 Hb_127361_010 Hb_127361_010 Hb_018283_010--Hb_127361_010 Hb_055002_010 Hb_055002_010 Hb_018283_010--Hb_055002_010 Hb_049490_010 Hb_049490_010 Hb_018283_010--Hb_049490_010 Hb_005352_020 Hb_005352_020 Hb_018283_010--Hb_005352_020 Hb_007524_040 Hb_007524_040 Hb_018283_010--Hb_007524_040 Hb_080126_010--Hb_127361_010 Hb_080126_010--Hb_055002_010 Hb_080126_010--Hb_049490_010 Hb_080126_010--Hb_005352_020 Hb_080126_010--Hb_007524_040 Hb_127361_010--Hb_055002_010 Hb_127361_010--Hb_049490_010 Hb_127361_010--Hb_005352_020 Hb_127361_010--Hb_007524_040 Hb_055002_010--Hb_049490_010 Hb_055002_010--Hb_005352_020 Hb_055002_010--Hb_007524_040 Hb_049490_010--Hb_005352_020 Hb_049490_010--Hb_007524_040 Hb_000917_020 Hb_000917_020 Hb_049490_010--Hb_000917_020 Hb_005352_020--Hb_007524_040 Hb_005352_020--Hb_000917_020 Hb_001255_070 Hb_001255_070 Hb_005352_020--Hb_001255_070 Hb_003908_010 Hb_003908_010 Hb_005352_020--Hb_003908_010 Hb_005300_050 Hb_005300_050 Hb_005352_020--Hb_005300_050 Hb_007524_040--Hb_000917_020 Hb_007524_040--Hb_001255_070 Hb_007524_040--Hb_003908_010 Hb_007524_040--Hb_005300_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0068988 0.22006

CAGE analysis