Hb_018292_010

Information

Type transcription factor
Description TF Family: NF-YB
Location Contig18292: 1501-2112
Sequence    

Annotation

kegg
ID vvi:100251431
description nuclear transcription factor Y subunit B-3
nr
ID XP_012081482.1
description PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
swissprot
ID O23310
description Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1
trembl
ID A0A067K1C4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18501 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nuclear transcription factor y subunit b-3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018292_010 0.0 transcription factor TF Family: NF-YB PREDICTED: nuclear transcription factor Y subunit B-3 [Jatropha curcas]
2 Hb_022833_100 0.0808639418 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
3 Hb_001571_050 0.0908116745 - - PREDICTED: endoplasmic reticulum-Golgi intermediate compartment protein 3-like [Populus euphratica]
4 Hb_002965_090 0.0949307666 - - importin alpha, putative [Ricinus communis]
5 Hb_005463_110 0.0977828138 - - PREDICTED: glyoxylate/hydroxypyruvate reductase HPR3-like [Jatropha curcas]
6 Hb_000174_180 0.098584092 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
7 Hb_002289_080 0.0988615296 - - hypothetical protein POPTR_0016s05590g [Populus trichocarpa]
8 Hb_000300_050 0.099931073 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001369_750 0.1014781177 - - PREDICTED: probable rRNA-processing protein EBP2 homolog [Jatropha curcas]
10 Hb_000172_290 0.1020771445 - - PREDICTED: trafficking protein particle complex subunit 12 [Jatropha curcas]
11 Hb_000193_270 0.1045499397 transcription factor TF Family: Pseudo ARR-B PREDICTED: two-component response regulator-like APRR1 isoform X1 [Jatropha curcas]
12 Hb_006373_040 0.106881672 - - PREDICTED: potassium transporter 11-like [Nicotiana tomentosiformis]
13 Hb_000254_090 0.1073973218 - - PREDICTED: la protein 2 [Jatropha curcas]
14 Hb_019616_020 0.1080504147 - - PREDICTED: alanine--tRNA ligase [Jatropha curcas]
15 Hb_002414_050 0.108795437 - - hypothetical protein CICLE_v10000243mg [Citrus clementina]
16 Hb_002276_020 0.108846568 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH49 isoform X1 [Jatropha curcas]
17 Hb_001449_040 0.1091220888 - - PREDICTED: SWR1 complex subunit 2 isoform X2 [Jatropha curcas]
18 Hb_000665_060 0.1103706842 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
19 Hb_001511_240 0.1113280576 - - PREDICTED: uncharacterized protein LOC105133574 isoform X3 [Populus euphratica]
20 Hb_000038_080 0.1118459734 - - PREDICTED: glutathione S-transferase F9-like [Jatropha curcas]

Gene co-expression network

sample Hb_018292_010 Hb_018292_010 Hb_022833_100 Hb_022833_100 Hb_018292_010--Hb_022833_100 Hb_001571_050 Hb_001571_050 Hb_018292_010--Hb_001571_050 Hb_002965_090 Hb_002965_090 Hb_018292_010--Hb_002965_090 Hb_005463_110 Hb_005463_110 Hb_018292_010--Hb_005463_110 Hb_000174_180 Hb_000174_180 Hb_018292_010--Hb_000174_180 Hb_002289_080 Hb_002289_080 Hb_018292_010--Hb_002289_080 Hb_000172_290 Hb_000172_290 Hb_022833_100--Hb_000172_290 Hb_044736_010 Hb_044736_010 Hb_022833_100--Hb_044736_010 Hb_022833_100--Hb_002289_080 Hb_002445_120 Hb_002445_120 Hb_022833_100--Hb_002445_120 Hb_003777_310 Hb_003777_310 Hb_022833_100--Hb_003777_310 Hb_001571_050--Hb_002965_090 Hb_002110_190 Hb_002110_190 Hb_001571_050--Hb_002110_190 Hb_011674_020 Hb_011674_020 Hb_001571_050--Hb_011674_020 Hb_000078_120 Hb_000078_120 Hb_001571_050--Hb_000078_120 Hb_004109_310 Hb_004109_310 Hb_001571_050--Hb_004109_310 Hb_000429_150 Hb_000429_150 Hb_001571_050--Hb_000429_150 Hb_056691_060 Hb_056691_060 Hb_002965_090--Hb_056691_060 Hb_000053_040 Hb_000053_040 Hb_002965_090--Hb_000053_040 Hb_001247_310 Hb_001247_310 Hb_002965_090--Hb_001247_310 Hb_007380_060 Hb_007380_060 Hb_002965_090--Hb_007380_060 Hb_000254_090 Hb_000254_090 Hb_002965_090--Hb_000254_090 Hb_001999_210 Hb_001999_210 Hb_005463_110--Hb_001999_210 Hb_003544_160 Hb_003544_160 Hb_005463_110--Hb_003544_160 Hb_002414_050 Hb_002414_050 Hb_005463_110--Hb_002414_050 Hb_001662_100 Hb_001662_100 Hb_005463_110--Hb_001662_100 Hb_001369_750 Hb_001369_750 Hb_005463_110--Hb_001369_750 Hb_000028_390 Hb_000028_390 Hb_000174_180--Hb_000028_390 Hb_000665_060 Hb_000665_060 Hb_000174_180--Hb_000665_060 Hb_001449_040 Hb_001449_040 Hb_000174_180--Hb_001449_040 Hb_000590_050 Hb_000590_050 Hb_000174_180--Hb_000590_050 Hb_000192_080 Hb_000192_080 Hb_000174_180--Hb_000192_080 Hb_019616_020 Hb_019616_020 Hb_000174_180--Hb_019616_020 Hb_001168_020 Hb_001168_020 Hb_002289_080--Hb_001168_020 Hb_000310_090 Hb_000310_090 Hb_002289_080--Hb_000310_090 Hb_005144_050 Hb_005144_050 Hb_002289_080--Hb_005144_050 Hb_025194_100 Hb_025194_100 Hb_002289_080--Hb_025194_100 Hb_006478_020 Hb_006478_020 Hb_002289_080--Hb_006478_020 Hb_025098_010 Hb_025098_010 Hb_002289_080--Hb_025098_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
31.73 18.6226 10.7052 44.1153 24.4296 44.8949
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.4201 23.6598 26.0894 32.2316 44.1352

CAGE analysis