Hb_018344_010

Information

Type -
Description -
Location Contig18344: 22414-23877
Sequence    

Annotation

kegg
ID pop:POPTR_0004s18870g
description POPTRDRAFT_831333; chitinase family protein
nr
ID XP_011046301.1
description PREDICTED: endochitinase 2-like [Populus euphratica]
swissprot
ID Q39799
description Endochitinase 1 OS=Gossypium hirsutum PE=3 SV=1
trembl
ID B9H1P7
description Chitinase family protein OS=Populus trichocarpa GN=POPTR_0004s18870g PE=4 SV=1
Gene Ontology
ID GO:0004568
description class i chitinase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_17929: 22395-23612
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018344_010 0.0 - - PREDICTED: endochitinase 2-like [Populus euphratica]
2 Hb_005389_110 0.1630235761 - - PREDICTED: uncharacterized protein LOC105637756 [Jatropha curcas]
3 Hb_003534_040 0.1905629566 - - hypothetical protein POPTR_0009s14420g [Populus trichocarpa]
4 Hb_116125_010 0.1950563978 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
5 Hb_000270_210 0.197219882 - - PREDICTED: transcription initiation factor IIB-2-like [Jatropha curcas]
6 Hb_105085_010 0.2233325252 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
7 Hb_001632_010 0.2409106738 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
8 Hb_088542_010 0.2419746797 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
9 Hb_002735_040 0.2422439821 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
10 Hb_004007_150 0.2476019924 transcription factor TF Family: TAZ PREDICTED: BTB/POZ and TAZ domain-containing protein 4 [Jatropha curcas]
11 Hb_001677_050 0.2513733359 desease resistance Gene Name: NB-ARC Disease resistance protein RPP8, putative [Ricinus communis]
12 Hb_073212_010 0.2528577104 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
13 Hb_000295_010 0.2716954762 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_000101_210 0.2734764175 - - PREDICTED: uncharacterized protein LOC105646445 [Jatropha curcas]
15 Hb_129067_010 0.2740063188 - - Cytochrome P450 superfamily protein [Theobroma cacao]
16 Hb_000590_080 0.2765229492 - - PREDICTED: metal tolerance protein 11 [Jatropha curcas]
17 Hb_000640_150 0.2794709647 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
18 Hb_002843_050 0.2813654645 - - scab resistance family protein [Populus trichocarpa]
19 Hb_000189_420 0.2850488187 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
20 Hb_027998_030 0.2912963494 - - laccase, putative [Ricinus communis]

Gene co-expression network

sample Hb_018344_010 Hb_018344_010 Hb_005389_110 Hb_005389_110 Hb_018344_010--Hb_005389_110 Hb_003534_040 Hb_003534_040 Hb_018344_010--Hb_003534_040 Hb_116125_010 Hb_116125_010 Hb_018344_010--Hb_116125_010 Hb_000270_210 Hb_000270_210 Hb_018344_010--Hb_000270_210 Hb_105085_010 Hb_105085_010 Hb_018344_010--Hb_105085_010 Hb_001632_010 Hb_001632_010 Hb_018344_010--Hb_001632_010 Hb_005389_110--Hb_000270_210 Hb_003929_060 Hb_003929_060 Hb_005389_110--Hb_003929_060 Hb_000402_010 Hb_000402_010 Hb_005389_110--Hb_000402_010 Hb_002735_040 Hb_002735_040 Hb_005389_110--Hb_002735_040 Hb_000640_150 Hb_000640_150 Hb_005389_110--Hb_000640_150 Hb_004007_150 Hb_004007_150 Hb_003534_040--Hb_004007_150 Hb_073212_010 Hb_073212_010 Hb_003534_040--Hb_073212_010 Hb_027998_030 Hb_027998_030 Hb_003534_040--Hb_027998_030 Hb_001691_050 Hb_001691_050 Hb_003534_040--Hb_001691_050 Hb_000101_210 Hb_000101_210 Hb_003534_040--Hb_000101_210 Hb_116125_010--Hb_000270_210 Hb_002259_040 Hb_002259_040 Hb_116125_010--Hb_002259_040 Hb_116125_010--Hb_105085_010 Hb_002232_150 Hb_002232_150 Hb_116125_010--Hb_002232_150 Hb_116125_010--Hb_005389_110 Hb_000270_210--Hb_000640_150 Hb_000270_210--Hb_002232_150 Hb_000270_210--Hb_002735_040 Hb_002804_050 Hb_002804_050 Hb_105085_010--Hb_002804_050 Hb_105085_010--Hb_002735_040 Hb_005122_060 Hb_005122_060 Hb_105085_010--Hb_005122_060 Hb_002843_050 Hb_002843_050 Hb_105085_010--Hb_002843_050 Hb_006615_100 Hb_006615_100 Hb_105085_010--Hb_006615_100 Hb_011344_170 Hb_011344_170 Hb_105085_010--Hb_011344_170 Hb_088542_010 Hb_088542_010 Hb_001632_010--Hb_088542_010 Hb_001677_050 Hb_001677_050 Hb_001632_010--Hb_001677_050 Hb_001632_010--Hb_073212_010 Hb_129067_010 Hb_129067_010 Hb_001632_010--Hb_129067_010 Hb_000605_010 Hb_000605_010 Hb_001632_010--Hb_000605_010 Hb_012384_050 Hb_012384_050 Hb_001632_010--Hb_012384_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
400.594 92.6596 2.71674 6.80069 156.701 142.448
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.33008 1.20009 0.406581 164.708 4.24546

CAGE analysis