Hb_018663_010

Information

Type transcription factor
Description TF Family: C2C2-YABBY
Location Contig18663: 41119-44465
Sequence    

Annotation

kegg
ID vvi:100254328
description axial regulator YABBY 5
nr
ID XP_012078813.1
description PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
swissprot
ID Q8GW46
description Axial regulator YABBY 5 OS=Arabidopsis thaliana GN=YAB5 PE=2 SV=1
trembl
ID A0A067KKT0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13349 PE=4 SV=1
Gene Ontology
ID GO:0003700
description axial regulator yabby 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18439: 41077-44698
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018663_010 0.0 transcription factor TF Family: C2C2-YABBY PREDICTED: axial regulator YABBY 5 [Jatropha curcas]
2 Hb_010737_030 0.037312123 - - unnamed protein product [Vitis vinifera]
3 Hb_008165_010 0.0415048946 - - PREDICTED: 36.4 kDa proline-rich protein [Solanum lycopersicum]
4 Hb_000375_200 0.0534450937 - - cyanohydrin UDP-glucosyltransferase UGT85K5 [Manihot esculenta]
5 Hb_000436_110 0.0539623409 - - PREDICTED: uncharacterized protein LOC105141197 [Populus euphratica]
6 Hb_000496_100 0.05633385 - - PREDICTED: cytochrome P450 94A2-like [Jatropha curcas]
7 Hb_102900_010 0.057737954 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At4g27290 isoform X2 [Jatropha curcas]
8 Hb_000193_170 0.0755537285 transcription factor TF Family: MYB Myb domain 16-like protein [Theobroma cacao]
9 Hb_003464_040 0.0769785254 transcription factor TF Family: HB homeobox protein, putative [Ricinus communis]
10 Hb_003226_040 0.0797374515 - - PREDICTED: endoglucanase 17 [Populus euphratica]
11 Hb_000028_010 0.0798477323 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000130_400 0.0814863013 transcription factor TF Family: bZIP hypothetical protein POPTR_0001s38320g [Populus trichocarpa]
13 Hb_000051_130 0.0817418201 - - Serine/threonine-protein kinase PBS1, putative [Ricinus communis]
14 Hb_012368_040 0.0830919781 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000187_020 0.0838434517 - - Xanthine/uracil permease family protein isoform 1 [Theobroma cacao]
16 Hb_000243_180 0.0853277664 - - PREDICTED: aldehyde dehydrogenase family 3 member F1 [Jatropha curcas]
17 Hb_002235_260 0.0893404628 transcription factor TF Family: MYB hypothetical protein POPTR_0017s12230g [Populus trichocarpa]
18 Hb_004117_060 0.0894797952 - - PREDICTED: GDSL esterase/lipase At1g33811 [Jatropha curcas]
19 Hb_000751_010 0.0910358821 - - conserved hypothetical protein [Ricinus communis]
20 Hb_059832_010 0.0958361243 - - PREDICTED: glutamate receptor 2.9-like [Jatropha curcas]

Gene co-expression network

sample Hb_018663_010 Hb_018663_010 Hb_010737_030 Hb_010737_030 Hb_018663_010--Hb_010737_030 Hb_008165_010 Hb_008165_010 Hb_018663_010--Hb_008165_010 Hb_000375_200 Hb_000375_200 Hb_018663_010--Hb_000375_200 Hb_000436_110 Hb_000436_110 Hb_018663_010--Hb_000436_110 Hb_000496_100 Hb_000496_100 Hb_018663_010--Hb_000496_100 Hb_102900_010 Hb_102900_010 Hb_018663_010--Hb_102900_010 Hb_010737_030--Hb_000496_100 Hb_010737_030--Hb_102900_010 Hb_010737_030--Hb_000436_110 Hb_010737_030--Hb_008165_010 Hb_010737_030--Hb_000375_200 Hb_008165_010--Hb_000436_110 Hb_008165_010--Hb_102900_010 Hb_002235_260 Hb_002235_260 Hb_008165_010--Hb_002235_260 Hb_004117_060 Hb_004117_060 Hb_008165_010--Hb_004117_060 Hb_000193_170 Hb_000193_170 Hb_000375_200--Hb_000193_170 Hb_000130_400 Hb_000130_400 Hb_000375_200--Hb_000130_400 Hb_003464_040 Hb_003464_040 Hb_000375_200--Hb_003464_040 Hb_000187_020 Hb_000187_020 Hb_000375_200--Hb_000187_020 Hb_012368_040 Hb_012368_040 Hb_000375_200--Hb_012368_040 Hb_000436_110--Hb_102900_010 Hb_000751_010 Hb_000751_010 Hb_000436_110--Hb_000751_010 Hb_003226_040 Hb_003226_040 Hb_000436_110--Hb_003226_040 Hb_028486_020 Hb_028486_020 Hb_000496_100--Hb_028486_020 Hb_000496_100--Hb_102900_010 Hb_000496_100--Hb_000130_400 Hb_000496_100--Hb_008165_010 Hb_102900_010--Hb_000751_010 Hb_102129_040 Hb_102129_040 Hb_102900_010--Hb_102129_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 62.5324 12.9526 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0651552 0 0.0265304 8.48649

CAGE analysis