Hb_018691_020

Information

Type -
Description -
Location Contig18691: 1276-1500
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018691_020 0.0 - - -
2 Hb_028487_130 0.1235801899 - - kinase family protein [Populus trichocarpa]
3 Hb_178793_010 0.1433309727 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase isozyme L3 [Nelumbo nucifera]
4 Hb_001255_010 0.1684920057 - - PREDICTED: phytosulfokine receptor 1-like [Tarenaya hassleriana]
5 Hb_007136_010 0.1795591084 desease resistance Gene Name: UBA PREDICTED: ATPase WRNIP1 [Jatropha curcas]
6 Hb_053519_010 0.1815490978 - - PREDICTED: probable zinc transporter protein DDB_G0282067 [Jatropha curcas]
7 Hb_001518_060 0.1822695078 transcription factor TF Family: SBP PREDICTED: squamosa promoter-binding-like protein 9 [Jatropha curcas]
8 Hb_002259_060 0.1829089389 - - PREDICTED: kinesin-like calmodulin-binding protein isoform X4 [Jatropha curcas]
9 Hb_010315_100 0.1880070209 - - PREDICTED: uncharacterized protein LOC104420162 [Eucalyptus grandis]
10 Hb_047583_010 0.1900019968 - - hydroxyproline-rich glycoprotein [Populus trichocarpa]
11 Hb_176894_010 0.1903160932 - - -
12 Hb_001818_060 0.1913575364 - - PREDICTED: cysteine proteinase inhibitor 5-like [Jatropha curcas]
13 Hb_002849_070 0.19235522 - - PREDICTED: protein BPS1, chloroplastic [Jatropha curcas]
14 Hb_001135_030 0.1944107822 - - PREDICTED: interaptin-like [Jatropha curcas]
15 Hb_063716_090 0.1959731278 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001856_170 0.1983376868 - - PREDICTED: ABC transporter B family member 27 [Jatropha curcas]
17 Hb_002122_030 0.199205411 - - -
18 Hb_001950_110 0.1995400816 transcription factor TF Family: MYB PREDICTED: transcription factor MYB44 [Jatropha curcas]
19 Hb_002235_370 0.1999461846 - - PREDICTED: probable calcium-binding protein CML45 [Jatropha curcas]
20 Hb_005618_090 0.2024152095 transcription factor TF Family: AUX/IAA Auxin-responsive protein IAA20, putative [Ricinus communis]

Gene co-expression network

sample Hb_018691_020 Hb_018691_020 Hb_028487_130 Hb_028487_130 Hb_018691_020--Hb_028487_130 Hb_178793_010 Hb_178793_010 Hb_018691_020--Hb_178793_010 Hb_001255_010 Hb_001255_010 Hb_018691_020--Hb_001255_010 Hb_007136_010 Hb_007136_010 Hb_018691_020--Hb_007136_010 Hb_053519_010 Hb_053519_010 Hb_018691_020--Hb_053519_010 Hb_001518_060 Hb_001518_060 Hb_018691_020--Hb_001518_060 Hb_001135_030 Hb_001135_030 Hb_028487_130--Hb_001135_030 Hb_000203_270 Hb_000203_270 Hb_028487_130--Hb_000203_270 Hb_002849_070 Hb_002849_070 Hb_028487_130--Hb_002849_070 Hb_003849_220 Hb_003849_220 Hb_028487_130--Hb_003849_220 Hb_010315_100 Hb_010315_100 Hb_028487_130--Hb_010315_100 Hb_178793_010--Hb_028487_130 Hb_178793_010--Hb_002849_070 Hb_000200_170 Hb_000200_170 Hb_178793_010--Hb_000200_170 Hb_005000_050 Hb_005000_050 Hb_178793_010--Hb_005000_050 Hb_000920_220 Hb_000920_220 Hb_178793_010--Hb_000920_220 Hb_002250_050 Hb_002250_050 Hb_001255_010--Hb_002250_050 Hb_017159_010 Hb_017159_010 Hb_001255_010--Hb_017159_010 Hb_000523_030 Hb_000523_030 Hb_001255_010--Hb_000523_030 Hb_001255_010--Hb_028487_130 Hb_001255_010--Hb_178793_010 Hb_001255_010--Hb_000203_270 Hb_003305_030 Hb_003305_030 Hb_007136_010--Hb_003305_030 Hb_002122_030 Hb_002122_030 Hb_007136_010--Hb_002122_030 Hb_041895_040 Hb_041895_040 Hb_007136_010--Hb_041895_040 Hb_007136_010--Hb_053519_010 Hb_001769_110 Hb_001769_110 Hb_007136_010--Hb_001769_110 Hb_020967_010 Hb_020967_010 Hb_053519_010--Hb_020967_010 Hb_056196_060 Hb_056196_060 Hb_053519_010--Hb_056196_060 Hb_001329_080 Hb_001329_080 Hb_053519_010--Hb_001329_080 Hb_004724_330 Hb_004724_330 Hb_053519_010--Hb_004724_330 Hb_001246_160 Hb_001246_160 Hb_053519_010--Hb_001246_160 Hb_006615_160 Hb_006615_160 Hb_053519_010--Hb_006615_160 Hb_012258_020 Hb_012258_020 Hb_001518_060--Hb_012258_020 Hb_001518_060--Hb_010315_100 Hb_001518_060--Hb_178793_010 Hb_005724_050 Hb_005724_050 Hb_001518_060--Hb_005724_050 Hb_001518_060--Hb_041895_040 Hb_000594_110 Hb_000594_110 Hb_001518_060--Hb_000594_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.725358 8.01946 5.27298 8.78477 2.16567 0.48429
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.79882 1.43835 0 3.72048 0.894294

CAGE analysis