Hb_018790_020

Information

Type -
Description -
Location Contig18790: 5546-13888
Sequence    

Annotation

kegg
ID rcu:RCOM_1252900
description protein kinase, putative (EC:2.7.10.2)
nr
ID XP_002522286.1
description protein kinase, putative [Ricinus communis]
swissprot
ID Q5GIG6
description Serine/threonine-protein kinase TNNI3K OS=Mus musculus GN=Tnni3k PE=2 SV=4
trembl
ID B9S8G7
description Protein kinase, putative OS=Ricinus communis GN=RCOM_1252900 PE=4 SV=1
Gene Ontology
ID GO:0005622
description integrin-linked protein kinase family protein isoform 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18518: 10236-10908 , PASA_asmbl_18519: 5590-13774 , PASA_asmbl_18520: 14438-16957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_020 0.0 - - protein kinase, putative [Ricinus communis]
2 Hb_001025_120 0.0462865408 transcription factor TF Family: Jumonji PREDICTED: jmjC domain-containing protein 4 [Jatropha curcas]
3 Hb_007894_150 0.0659034785 - - hypothetical protein EUGRSUZ_F03462 [Eucalyptus grandis]
4 Hb_000028_520 0.0674856613 - - hypothetical protein L484_025125 [Morus notabilis]
5 Hb_002716_060 0.0678994156 - - carboxylesterase np, putative [Ricinus communis]
6 Hb_000365_230 0.070754955 - - PREDICTED: uncharacterized protein LOC105649056 [Jatropha curcas]
7 Hb_004109_320 0.07330011 - - PREDICTED: vacuolar protein sorting-associated protein 52 A [Jatropha curcas]
8 Hb_000120_890 0.0735662394 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
9 Hb_089839_010 0.0749097536 - - PREDICTED: probable xyloglucan glycosyltransferase 6 [Jatropha curcas]
10 Hb_004807_020 0.0758918468 - - PREDICTED: transcription initiation factor TFIID subunit 14b-like [Jatropha curcas]
11 Hb_001723_150 0.0789973265 - - S-adenosylmethionine-dependent methyltransferase, putative [Ricinus communis]
12 Hb_005271_040 0.0798572149 - - PREDICTED: serine racemase [Jatropha curcas]
13 Hb_003861_060 0.081626478 - - PREDICTED: treacle protein [Jatropha curcas]
14 Hb_171900_090 0.0819828595 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000359_040 0.082077821 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003498_100 0.0825182566 - - component of oligomeric golgi complex, putative [Ricinus communis]
17 Hb_000703_190 0.085228855 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
18 Hb_000019_190 0.0854319247 - - hypothetical protein POPTR_0002s23900g [Populus trichocarpa]
19 Hb_000774_020 0.0861624932 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
20 Hb_000476_060 0.0865244853 - - Tetratricopeptide repeat (TPR)-like superfamily protein isoform 1 [Theobroma cacao]

Gene co-expression network

sample Hb_018790_020 Hb_018790_020 Hb_001025_120 Hb_001025_120 Hb_018790_020--Hb_001025_120 Hb_007894_150 Hb_007894_150 Hb_018790_020--Hb_007894_150 Hb_000028_520 Hb_000028_520 Hb_018790_020--Hb_000028_520 Hb_002716_060 Hb_002716_060 Hb_018790_020--Hb_002716_060 Hb_000365_230 Hb_000365_230 Hb_018790_020--Hb_000365_230 Hb_004109_320 Hb_004109_320 Hb_018790_020--Hb_004109_320 Hb_001025_120--Hb_002716_060 Hb_000676_070 Hb_000676_070 Hb_001025_120--Hb_000676_070 Hb_001025_120--Hb_007894_150 Hb_004807_020 Hb_004807_020 Hb_001025_120--Hb_004807_020 Hb_001025_120--Hb_000028_520 Hb_007894_150--Hb_004109_320 Hb_164390_010 Hb_164390_010 Hb_007894_150--Hb_164390_010 Hb_007894_150--Hb_000365_230 Hb_006189_020 Hb_006189_020 Hb_007894_150--Hb_006189_020 Hb_005000_170 Hb_005000_170 Hb_007894_150--Hb_005000_170 Hb_001226_150 Hb_001226_150 Hb_007894_150--Hb_001226_150 Hb_002157_120 Hb_002157_120 Hb_000028_520--Hb_002157_120 Hb_000061_180 Hb_000061_180 Hb_000028_520--Hb_000061_180 Hb_000058_130 Hb_000058_130 Hb_000028_520--Hb_000058_130 Hb_003119_060 Hb_003119_060 Hb_000028_520--Hb_003119_060 Hb_000476_060 Hb_000476_060 Hb_002716_060--Hb_000476_060 Hb_002716_060--Hb_004109_320 Hb_043792_010 Hb_043792_010 Hb_002716_060--Hb_043792_010 Hb_000282_090 Hb_000282_090 Hb_002716_060--Hb_000282_090 Hb_000365_230--Hb_164390_010 Hb_000365_230--Hb_004109_320 Hb_003098_070 Hb_003098_070 Hb_000365_230--Hb_003098_070 Hb_062226_130 Hb_062226_130 Hb_000365_230--Hb_062226_130 Hb_000778_010 Hb_000778_010 Hb_000365_230--Hb_000778_010 Hb_004109_320--Hb_164390_010 Hb_002014_010 Hb_002014_010 Hb_004109_320--Hb_002014_010 Hb_002849_130 Hb_002849_130 Hb_004109_320--Hb_002849_130 Hb_000477_050 Hb_000477_050 Hb_004109_320--Hb_000477_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.46671 12.7575 25.1318 15.9227 11.751 8.07535
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.0213 14.0749 13.0581 12.7501 12.6949

CAGE analysis