Hb_018790_030

Information

Type -
Description -
Location Contig18790: 14543-17101
Sequence    

Annotation

kegg
ID rcu:RCOM_1252890
description Cyclic phosphodiesterase, putative
nr
ID XP_012091853.1
description PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
swissprot
ID O04147
description Cyclic phosphodiesterase OS=Arabidopsis thaliana GN=At4g18930 PE=1 SV=1
trembl
ID A0A067JBH8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21632 PE=4 SV=1
Gene Ontology
ID GO:0004112
description cyclic phosphodiesterase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18520: 14438-16957
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_030 0.0 - - PREDICTED: cyclic phosphodiesterase-like [Jatropha curcas]
2 Hb_003656_130 0.0731221727 - - PREDICTED: protein bem46 isoform X2 [Jatropha curcas]
3 Hb_007059_010 0.0912915043 - - PREDICTED: uncharacterized protein LOC105642418 [Jatropha curcas]
4 Hb_002671_100 0.092700787 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase-like [Jatropha curcas]
5 Hb_000933_090 0.0974457439 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
6 Hb_003090_080 0.0996033414 transcription factor TF Family: MYB PREDICTED: myb-like protein B [Jatropha curcas]
7 Hb_002149_020 0.1007430035 - - PREDICTED: uncharacterized protein LOC105647982 isoform X2 [Jatropha curcas]
8 Hb_066182_010 0.1010811337 - - PREDICTED: guanine nucleotide-binding protein subunit beta-like protein [Jatropha curcas]
9 Hb_000849_070 0.1011858768 - - PREDICTED: uncharacterized protein LOC105644190 [Jatropha curcas]
10 Hb_123954_010 0.1019954722 - - PREDICTED: plastidic glucose transporter 4 [Jatropha curcas]
11 Hb_007594_130 0.1026631021 - - PREDICTED: lysophospholipid acyltransferase LPEAT2 isoform X1 [Jatropha curcas]
12 Hb_040262_010 0.1030857463 - - PREDICTED: aspartate carbamoyltransferase 1, chloroplastic [Jatropha curcas]
13 Hb_007044_080 0.1033469862 - - PREDICTED: transmembrane protein 33 homolog [Jatropha curcas]
14 Hb_009775_020 0.1045895402 - - PREDICTED: vesicle transport protein GOT1B-like [Jatropha curcas]
15 Hb_000538_100 0.1046309175 - - conserved hypothetical protein [Ricinus communis]
16 Hb_001689_020 0.1052396934 - - hypothetical protein JCGZ_10660 [Jatropha curcas]
17 Hb_000123_090 0.1071088408 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os03g0620400-like [Jatropha curcas]
18 Hb_001369_420 0.1079489595 - - PREDICTED: E3 ubiquitin protein ligase RIN2 [Jatropha curcas]
19 Hb_003502_080 0.1081636749 - - vacuolar protein sorting, putative [Ricinus communis]
20 Hb_023344_030 0.109055091 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]

Gene co-expression network

sample Hb_018790_030 Hb_018790_030 Hb_003656_130 Hb_003656_130 Hb_018790_030--Hb_003656_130 Hb_007059_010 Hb_007059_010 Hb_018790_030--Hb_007059_010 Hb_002671_100 Hb_002671_100 Hb_018790_030--Hb_002671_100 Hb_000933_090 Hb_000933_090 Hb_018790_030--Hb_000933_090 Hb_003090_080 Hb_003090_080 Hb_018790_030--Hb_003090_080 Hb_002149_020 Hb_002149_020 Hb_018790_030--Hb_002149_020 Hb_000012_090 Hb_000012_090 Hb_003656_130--Hb_000012_090 Hb_010120_030 Hb_010120_030 Hb_003656_130--Hb_010120_030 Hb_000956_030 Hb_000956_030 Hb_003656_130--Hb_000956_030 Hb_000803_300 Hb_000803_300 Hb_003656_130--Hb_000803_300 Hb_003656_130--Hb_002149_020 Hb_006827_020 Hb_006827_020 Hb_007059_010--Hb_006827_020 Hb_007317_110 Hb_007317_110 Hb_007059_010--Hb_007317_110 Hb_002783_240 Hb_002783_240 Hb_007059_010--Hb_002783_240 Hb_000538_100 Hb_000538_100 Hb_007059_010--Hb_000538_100 Hb_103012_010 Hb_103012_010 Hb_007059_010--Hb_103012_010 Hb_009775_020 Hb_009775_020 Hb_007059_010--Hb_009775_020 Hb_007594_130 Hb_007594_130 Hb_002671_100--Hb_007594_130 Hb_040262_010 Hb_040262_010 Hb_002671_100--Hb_040262_010 Hb_004881_020 Hb_004881_020 Hb_002671_100--Hb_004881_020 Hb_144598_030 Hb_144598_030 Hb_002671_100--Hb_144598_030 Hb_004117_130 Hb_004117_130 Hb_002671_100--Hb_004117_130 Hb_000260_170 Hb_000260_170 Hb_002671_100--Hb_000260_170 Hb_007044_080 Hb_007044_080 Hb_000933_090--Hb_007044_080 Hb_000933_090--Hb_004117_130 Hb_004837_190 Hb_004837_190 Hb_000933_090--Hb_004837_190 Hb_000051_070 Hb_000051_070 Hb_000933_090--Hb_000051_070 Hb_001369_420 Hb_001369_420 Hb_000933_090--Hb_001369_420 Hb_000358_150 Hb_000358_150 Hb_000933_090--Hb_000358_150 Hb_106371_010 Hb_106371_010 Hb_003090_080--Hb_106371_010 Hb_000160_040 Hb_000160_040 Hb_003090_080--Hb_000160_040 Hb_028639_010 Hb_028639_010 Hb_003090_080--Hb_028639_010 Hb_003090_080--Hb_001369_420 Hb_033834_060 Hb_033834_060 Hb_003090_080--Hb_033834_060 Hb_003090_080--Hb_004117_130 Hb_002609_110 Hb_002609_110 Hb_002149_020--Hb_002609_110 Hb_066182_010 Hb_066182_010 Hb_002149_020--Hb_066182_010 Hb_004440_090 Hb_004440_090 Hb_002149_020--Hb_004440_090 Hb_002391_300 Hb_002391_300 Hb_002149_020--Hb_002391_300 Hb_000300_060 Hb_000300_060 Hb_002149_020--Hb_000300_060 Hb_003005_020 Hb_003005_020 Hb_002149_020--Hb_003005_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
54.8976 29.4558 18.0521 56.201 95.4747 74.3737
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
59.6026 45.864 36.6693 33.5806 12.8586

CAGE analysis