Hb_018790_050

Information

Type -
Description -
Location Contig18790: 19406-30590
Sequence    

Annotation

kegg
ID cic:CICLE_v10017858mg
description hypothetical protein
nr
ID XP_006449569.1
description hypothetical protein CICLE_v10017858mg [Citrus clementina]
swissprot
ID Q9C7N2
description MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana GN=CAD1 PE=2 SV=1
trembl
ID V4W966
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10017858mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description macpf domain-containing protein cad1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18522: 24595-30465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_050 0.0 - - hypothetical protein CICLE_v10017858mg [Citrus clementina]
2 Hb_013358_020 0.0868902487 - - ccr4-associated factor, putative [Ricinus communis]
3 Hb_004117_170 0.0882077059 - - PREDICTED: probable receptor-like protein kinase At3g55450 [Jatropha curcas]
4 Hb_001898_130 0.0882422322 - - ATP binding protein, putative [Ricinus communis]
5 Hb_056196_060 0.0917223353 - - hexokinase [Manihot esculenta]
6 Hb_000035_050 0.0932570515 - - PREDICTED: probable CCR4-associated factor 1 homolog 7 [Jatropha curcas]
7 Hb_007253_010 0.1101177611 - - syntaxin, putative [Ricinus communis]
8 Hb_001246_160 0.1119209684 - - PREDICTED: dynamin-related protein 1E isoform X2 [Jatropha curcas]
9 Hb_003581_280 0.1121779553 - - KINASE 2B family protein [Populus trichocarpa]
10 Hb_000749_070 0.1133690114 - - PREDICTED: E3 ubiquitin-protein ligase RMA3-like [Jatropha curcas]
11 Hb_000421_230 0.1153786408 - - retinal degeneration B beta, putative [Ricinus communis]
12 Hb_000009_200 0.1155497659 - - PREDICTED: UPF0496 protein At2g18630 [Jatropha curcas]
13 Hb_002900_120 0.1164647019 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 [Jatropha curcas]
14 Hb_005714_100 0.1165457867 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Vitis vinifera]
15 Hb_159809_050 0.1229409065 - - AT14A, putative [Ricinus communis]
16 Hb_003670_030 0.1244564508 - - PREDICTED: probable calcium-binding protein CML35 [Jatropha curcas]
17 Hb_000069_330 0.1248182837 - - protein with unknown function [Ricinus communis]
18 Hb_000046_310 0.1318580774 - - PREDICTED: inactive beta-amylase 9 [Jatropha curcas]
19 Hb_001376_010 0.1364740412 - - diacylglycerol kinase, alpha, putative [Ricinus communis]
20 Hb_000272_110 0.1395021444 - - PREDICTED: uncharacterized protein LOC105633479 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_018790_050 Hb_018790_050 Hb_013358_020 Hb_013358_020 Hb_018790_050--Hb_013358_020 Hb_004117_170 Hb_004117_170 Hb_018790_050--Hb_004117_170 Hb_001898_130 Hb_001898_130 Hb_018790_050--Hb_001898_130 Hb_056196_060 Hb_056196_060 Hb_018790_050--Hb_056196_060 Hb_000035_050 Hb_000035_050 Hb_018790_050--Hb_000035_050 Hb_007253_010 Hb_007253_010 Hb_018790_050--Hb_007253_010 Hb_000749_070 Hb_000749_070 Hb_013358_020--Hb_000749_070 Hb_013358_020--Hb_000035_050 Hb_013358_020--Hb_007253_010 Hb_013358_020--Hb_004117_170 Hb_084849_010 Hb_084849_010 Hb_013358_020--Hb_084849_010 Hb_004117_170--Hb_000035_050 Hb_004117_170--Hb_007253_010 Hb_004117_170--Hb_000749_070 Hb_001376_010 Hb_001376_010 Hb_004117_170--Hb_001376_010 Hb_000069_330 Hb_000069_330 Hb_001898_130--Hb_000069_330 Hb_003581_280 Hb_003581_280 Hb_001898_130--Hb_003581_280 Hb_000009_200 Hb_000009_200 Hb_001898_130--Hb_000009_200 Hb_001474_050 Hb_001474_050 Hb_001898_130--Hb_001474_050 Hb_048476_040 Hb_048476_040 Hb_001898_130--Hb_048476_040 Hb_003670_030 Hb_003670_030 Hb_056196_060--Hb_003670_030 Hb_056196_060--Hb_000035_050 Hb_008112_010 Hb_008112_010 Hb_056196_060--Hb_008112_010 Hb_056196_060--Hb_000009_200 Hb_005714_100 Hb_005714_100 Hb_056196_060--Hb_005714_100 Hb_000035_050--Hb_005714_100 Hb_000035_050--Hb_001376_010 Hb_159809_050 Hb_159809_050 Hb_007253_010--Hb_159809_050 Hb_007253_010--Hb_000749_070 Hb_007253_010--Hb_000035_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.43838 16.8018 15.7428 12.0732 0.910169 1.69082
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.68207 4.28616 3.39245 3.61288 4.04247

CAGE analysis