Hb_018790_060

Information

Type -
Description -
Location Contig18790: 34318-66981
Sequence    

Annotation

kegg
ID fve:101293282
description probable leucine-rich repeat receptor-like serine/threonine-protein kinase At3g14840-like
nr
ID KDP21157.1
description hypothetical protein JCGZ_21628 [Jatropha curcas]
swissprot
ID C0LGG8
description Probable LRR receptor-like serine/threonine-protein kinase At1g53430 OS=Arabidopsis thaliana GN=At1g53430 PE=1 SV=1
trembl
ID A0A067JBK8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_21628 PE=3 SV=1
Gene Ontology
ID GO:0004674
description probable lrr receptor-like serine threonine-protein kinase at1g53430 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18524: 37471-42190 , PASA_asmbl_18525: 37471-56277 , PASA_asmbl_18526: 54598-55625 , PASA_asmbl_18527: 65949-66142
cDNA
(Sanger)
(ID:Location)		 032_H18.ab1: 37475-38715 , 040_M21.ab1: 37471-39362 , 044_A03.ab1: 37541-39429

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018790_060 0.0 - - hypothetical protein JCGZ_21628 [Jatropha curcas]
2 Hb_000061_420 0.0678468734 - - PREDICTED: uncharacterized protein LOC105640585 [Jatropha curcas]
3 Hb_022216_020 0.076288993 - - cinnamoyl-CoA reductase, putative [Ricinus communis]
4 Hb_000009_160 0.0808119811 - - RUB1 conjugating enzyme 1 isoform 2 [Theobroma cacao]
5 Hb_001123_230 0.0891795662 - - PREDICTED: uncharacterized protein LOC105647321 [Jatropha curcas]
6 Hb_000224_170 0.0897129521 - - hypothetical protein JCGZ_13777 [Jatropha curcas]
7 Hb_005147_090 0.0912853769 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X1 [Jatropha curcas]
8 Hb_003018_200 0.0937224019 - - inositol or phosphatidylinositol kinase, putative [Ricinus communis]
9 Hb_001377_290 0.0938893135 - - PREDICTED: cyclic pyranopterin monophosphate synthase accessory protein, mitochondrial [Jatropha curcas]
10 Hb_001863_390 0.0940099218 - - PREDICTED: monoacylglycerol lipase ABHD6 [Jatropha curcas]
11 Hb_001248_130 0.0954028717 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 69 isoform X1 [Jatropha curcas]
12 Hb_001205_070 0.0965803226 - - PREDICTED: vam6/Vps39-like protein [Jatropha curcas]
13 Hb_002835_410 0.0971512477 - - clathrin coat assembly protein ap-1, putative [Ricinus communis]
14 Hb_000445_180 0.0972857605 transcription factor TF Family: TRAF PREDICTED: BTB/POZ domain-containing protein At4g08455 [Jatropha curcas]
15 Hb_004223_280 0.0979268962 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 6 [Jatropha curcas]
16 Hb_163145_020 0.0992986591 - - PREDICTED: protein phosphatase 2C 29 [Jatropha curcas]
17 Hb_000291_110 0.0993491211 - - eukaryotic translation initiation factor [Hevea brasiliensis]
18 Hb_003680_200 0.0996276438 - - PREDICTED: F-box protein PP2-A15 [Jatropha curcas]
19 Hb_000926_330 0.1008034339 transcription factor TF Family: ERF ethylene-responsive transcription factor 3-like [Jatropha curcas]
20 Hb_005431_010 0.1015770206 - - PREDICTED: glycine cleavage system H protein 2, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_018790_060 Hb_018790_060 Hb_000061_420 Hb_000061_420 Hb_018790_060--Hb_000061_420 Hb_022216_020 Hb_022216_020 Hb_018790_060--Hb_022216_020 Hb_000009_160 Hb_000009_160 Hb_018790_060--Hb_000009_160 Hb_001123_230 Hb_001123_230 Hb_018790_060--Hb_001123_230 Hb_000224_170 Hb_000224_170 Hb_018790_060--Hb_000224_170 Hb_005147_090 Hb_005147_090 Hb_018790_060--Hb_005147_090 Hb_003680_200 Hb_003680_200 Hb_000061_420--Hb_003680_200 Hb_000061_420--Hb_000224_170 Hb_000291_110 Hb_000291_110 Hb_000061_420--Hb_000291_110 Hb_000926_330 Hb_000926_330 Hb_000061_420--Hb_000926_330 Hb_181235_010 Hb_181235_010 Hb_000061_420--Hb_181235_010 Hb_003976_010 Hb_003976_010 Hb_022216_020--Hb_003976_010 Hb_001377_290 Hb_001377_290 Hb_022216_020--Hb_001377_290 Hb_002835_410 Hb_002835_410 Hb_022216_020--Hb_002835_410 Hb_000174_090 Hb_000174_090 Hb_022216_020--Hb_000174_090 Hb_007426_230 Hb_007426_230 Hb_022216_020--Hb_007426_230 Hb_000671_090 Hb_000671_090 Hb_000009_160--Hb_000671_090 Hb_007943_090 Hb_007943_090 Hb_000009_160--Hb_007943_090 Hb_000205_270 Hb_000205_270 Hb_000009_160--Hb_000205_270 Hb_005431_010 Hb_005431_010 Hb_000009_160--Hb_005431_010 Hb_016065_010 Hb_016065_010 Hb_000009_160--Hb_016065_010 Hb_055062_030 Hb_055062_030 Hb_000009_160--Hb_055062_030 Hb_001123_230--Hb_005147_090 Hb_163145_020 Hb_163145_020 Hb_001123_230--Hb_163145_020 Hb_000997_400 Hb_000997_400 Hb_001123_230--Hb_000997_400 Hb_000297_200 Hb_000297_200 Hb_001123_230--Hb_000297_200 Hb_001123_230--Hb_000061_420 Hb_001623_420 Hb_001623_420 Hb_000224_170--Hb_001623_420 Hb_031527_040 Hb_031527_040 Hb_000224_170--Hb_031527_040 Hb_000224_170--Hb_000926_330 Hb_000224_170--Hb_181235_010 Hb_003777_330 Hb_003777_330 Hb_000224_170--Hb_003777_330 Hb_000457_150 Hb_000457_150 Hb_005147_090--Hb_000457_150 Hb_005147_090--Hb_000297_200 Hb_003750_080 Hb_003750_080 Hb_005147_090--Hb_003750_080 Hb_000200_340 Hb_000200_340 Hb_005147_090--Hb_000200_340
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.9646 4.84833 1.92539 3.63991 8.31091 6.12662
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.89963 9.55932 11.2065 4.26521 1.14602

CAGE analysis