Hb_018838_030

Information

Type -
Description -
Location Contig18838: 36645-44713
Sequence    

Annotation

kegg
ID rcu:RCOM_0369220
description hypothetical protein
nr
ID XP_002532512.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q6ZQ03
description Formin-binding protein 4 OS=Mus musculus GN=Fnbp4 PE=1 SV=2
trembl
ID B9T2P3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0369220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18619: 36803-41074 , PASA_asmbl_18622: 41692-42298 , PASA_asmbl_18624: 43796-44702 , PASA_asmbl_18625: 42495-44551
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018838_030 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000210_180 0.0653032009 - - PREDICTED: protein YLS9-like [Jatropha curcas]
3 Hb_015292_030 0.0686600325 - - PREDICTED: pentatricopeptide repeat-containing protein At3g02490, mitochondrial [Jatropha curcas]
4 Hb_000032_290 0.0696954531 transcription factor TF Family: RWP-RK PREDICTED: protein NLP7-like [Jatropha curcas]
5 Hb_000085_050 0.0697568666 - - PREDICTED: grpE protein homolog, mitochondrial isoform X1 [Jatropha curcas]
6 Hb_063090_010 0.0712708433 - - PREDICTED: ultraviolet-B receptor UVR8 isoform X2 [Jatropha curcas]
7 Hb_007441_200 0.0720958802 - - PREDICTED: uncharacterized protein LOC105643248 [Jatropha curcas]
8 Hb_006332_020 0.0732826735 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 [Jatropha curcas]
9 Hb_000030_300 0.0739468315 - - Thioredoxin, putative [Ricinus communis]
10 Hb_001226_160 0.0740196437 - - PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform X1 [Jatropha curcas]
11 Hb_000808_230 0.0743459957 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
12 Hb_000656_400 0.0752474665 - - PREDICTED: transcription initiation factor TFIID subunit 9 [Jatropha curcas]
13 Hb_001571_040 0.0769231394 - - PREDICTED: uncharacterized protein LOC105643972 [Jatropha curcas]
14 Hb_000373_280 0.077112047 - - PREDICTED: sterol 3-beta-glucosyltransferase UGT80B1 isoform X1 [Jatropha curcas]
15 Hb_001545_120 0.0779542096 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
16 Hb_001242_060 0.0806655429 - - PREDICTED: uncharacterized protein LOC105139508 [Populus euphratica]
17 Hb_000041_270 0.0812810446 - - PREDICTED: mitochondrial import receptor subunit TOM40-1 [Jatropha curcas]
18 Hb_006400_030 0.0818558722 - - hypothetical protein OsI_01237 [Oryza sativa Indica Group]
19 Hb_002026_180 0.0818795166 - - PREDICTED: uncharacterized protein LOC105645805 [Jatropha curcas]
20 Hb_003952_090 0.0822733805 - - PREDICTED: threonine dehydratase biosynthetic, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_018838_030 Hb_018838_030 Hb_000210_180 Hb_000210_180 Hb_018838_030--Hb_000210_180 Hb_015292_030 Hb_015292_030 Hb_018838_030--Hb_015292_030 Hb_000032_290 Hb_000032_290 Hb_018838_030--Hb_000032_290 Hb_000085_050 Hb_000085_050 Hb_018838_030--Hb_000085_050 Hb_063090_010 Hb_063090_010 Hb_018838_030--Hb_063090_010 Hb_007441_200 Hb_007441_200 Hb_018838_030--Hb_007441_200 Hb_000041_270 Hb_000041_270 Hb_000210_180--Hb_000041_270 Hb_096563_010 Hb_096563_010 Hb_000210_180--Hb_096563_010 Hb_000656_400 Hb_000656_400 Hb_000210_180--Hb_000656_400 Hb_006332_020 Hb_006332_020 Hb_000210_180--Hb_006332_020 Hb_001242_060 Hb_001242_060 Hb_000210_180--Hb_001242_060 Hb_015292_030--Hb_000032_290 Hb_001790_020 Hb_001790_020 Hb_015292_030--Hb_001790_020 Hb_002137_020 Hb_002137_020 Hb_015292_030--Hb_002137_020 Hb_039946_020 Hb_039946_020 Hb_015292_030--Hb_039946_020 Hb_003994_240 Hb_003994_240 Hb_015292_030--Hb_003994_240 Hb_000245_130 Hb_000245_130 Hb_000032_290--Hb_000245_130 Hb_000406_220 Hb_000406_220 Hb_000032_290--Hb_000406_220 Hb_181235_010 Hb_181235_010 Hb_000032_290--Hb_181235_010 Hb_000554_020 Hb_000554_020 Hb_000032_290--Hb_000554_020 Hb_000032_290--Hb_006332_020 Hb_002183_090 Hb_002183_090 Hb_000085_050--Hb_002183_090 Hb_005618_170 Hb_005618_170 Hb_000085_050--Hb_005618_170 Hb_058999_020 Hb_058999_020 Hb_000085_050--Hb_058999_020 Hb_000976_170 Hb_000976_170 Hb_000085_050--Hb_000976_170 Hb_108350_010 Hb_108350_010 Hb_000085_050--Hb_108350_010 Hb_000107_330 Hb_000107_330 Hb_000085_050--Hb_000107_330 Hb_002079_010 Hb_002079_010 Hb_063090_010--Hb_002079_010 Hb_001789_240 Hb_001789_240 Hb_063090_010--Hb_001789_240 Hb_005993_040 Hb_005993_040 Hb_063090_010--Hb_005993_040 Hb_000853_170 Hb_000853_170 Hb_063090_010--Hb_000853_170 Hb_006400_030 Hb_006400_030 Hb_063090_010--Hb_006400_030 Hb_003106_060 Hb_003106_060 Hb_007441_200--Hb_003106_060 Hb_007441_200--Hb_005618_170 Hb_005305_080 Hb_005305_080 Hb_007441_200--Hb_005305_080 Hb_000571_120 Hb_000571_120 Hb_007441_200--Hb_000571_120 Hb_000805_020 Hb_000805_020 Hb_007441_200--Hb_000805_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
14.6522 9.40389 4.95096 4.67389 11.9586 18.0223
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.6416 17.9714 12.8963 11.5378 7.26212

CAGE analysis