Hb_018954_010

Information

Type -
Description -
Location Contig18954: 8524-11073
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018954_010 0.0 - - -
2 Hb_100873_030 0.1615930309 - - PREDICTED: uncharacterized protein LOC105795653 [Gossypium raimondii]
3 Hb_000972_010 0.1855293781 - - PREDICTED: kinesin KP1 [Jatropha curcas]
4 Hb_001534_170 0.1941763319 - - Uncharacterized protein TCM_038456 [Theobroma cacao]
5 Hb_000141_240 0.2024772501 - - PREDICTED: protein NRT1/ PTR FAMILY 6.3 isoform X1 [Jatropha curcas]
6 Hb_017124_020 0.2040122644 - - hypothetical protein PRUPE_ppa015539mg [Prunus persica]
7 Hb_000995_070 0.2067611598 - - PREDICTED: secoisolariciresinol dehydrogenase-like [Jatropha curcas]
8 Hb_004871_050 0.2071988863 - - hypothetical protein F383_22684 [Gossypium arboreum]
9 Hb_156473_010 0.2212448775 - - PREDICTED: putative ribonuclease H protein At1g65750 [Prunus mume]
10 Hb_042223_010 0.2278277675 - - Protein Z, putative [Ricinus communis]
11 Hb_010417_010 0.2339517809 transcription factor TF Family: WRKY WRKY transcription factor, putative [Ricinus communis]
12 Hb_000172_570 0.237738622 - - PREDICTED: uncharacterized protein LOC105636518 isoform X1 [Jatropha curcas]
13 Hb_000784_040 0.240627226 - - hypothetical protein POPTR_0013s11550g [Populus trichocarpa]
14 Hb_008516_020 0.2427542177 - - PREDICTED: putative B3 domain-containing protein At2g27410 [Jatropha curcas]
15 Hb_000453_220 0.2445264506 - - hypothetical protein JCGZ_11079 [Jatropha curcas]
16 Hb_002073_120 0.2489813619 - - Adenine nucleotide alpha hydrolases-like superfamily protein [Theobroma cacao]
17 Hb_000009_070 0.2491822095 - - PREDICTED: globulin-1 S allele [Jatropha curcas]
18 Hb_008790_050 0.2543732274 - - conserved hypothetical protein [Ricinus communis]
19 Hb_003599_070 0.2601889689 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
20 Hb_001391_140 0.2663047703 - - PREDICTED: uncharacterized protein LOC101293660 [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_018954_010 Hb_018954_010 Hb_100873_030 Hb_100873_030 Hb_018954_010--Hb_100873_030 Hb_000972_010 Hb_000972_010 Hb_018954_010--Hb_000972_010 Hb_001534_170 Hb_001534_170 Hb_018954_010--Hb_001534_170 Hb_000141_240 Hb_000141_240 Hb_018954_010--Hb_000141_240 Hb_017124_020 Hb_017124_020 Hb_018954_010--Hb_017124_020 Hb_000995_070 Hb_000995_070 Hb_018954_010--Hb_000995_070 Hb_100873_030--Hb_000995_070 Hb_100873_030--Hb_000141_240 Hb_042223_010 Hb_042223_010 Hb_100873_030--Hb_042223_010 Hb_156473_010 Hb_156473_010 Hb_100873_030--Hb_156473_010 Hb_000009_070 Hb_000009_070 Hb_100873_030--Hb_000009_070 Hb_004871_050 Hb_004871_050 Hb_000972_010--Hb_004871_050 Hb_000972_010--Hb_017124_020 Hb_000103_110 Hb_000103_110 Hb_000972_010--Hb_000103_110 Hb_000120_650 Hb_000120_650 Hb_000972_010--Hb_000120_650 Hb_000120_120 Hb_000120_120 Hb_000972_010--Hb_000120_120 Hb_000157_040 Hb_000157_040 Hb_000972_010--Hb_000157_040 Hb_001534_170--Hb_000995_070 Hb_010417_010 Hb_010417_010 Hb_001534_170--Hb_010417_010 Hb_001534_170--Hb_100873_030 Hb_001534_170--Hb_004871_050 Hb_174876_010 Hb_174876_010 Hb_001534_170--Hb_174876_010 Hb_000172_570 Hb_000172_570 Hb_000141_240--Hb_000172_570 Hb_002073_120 Hb_002073_120 Hb_000141_240--Hb_002073_120 Hb_000141_240--Hb_000009_070 Hb_000141_240--Hb_000995_070 Hb_017124_020--Hb_000120_650 Hb_017124_020--Hb_004871_050 Hb_000567_250 Hb_000567_250 Hb_017124_020--Hb_000567_250 Hb_027892_010 Hb_027892_010 Hb_017124_020--Hb_027892_010 Hb_000249_090 Hb_000249_090 Hb_017124_020--Hb_000249_090 Hb_001114_340 Hb_001114_340 Hb_000995_070--Hb_001114_340 Hb_000784_040 Hb_000784_040 Hb_000995_070--Hb_000784_040 Hb_000995_070--Hb_002073_120 Hb_000995_070--Hb_000172_570 Hb_000995_070--Hb_010417_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.354275 0 0 0 0.161222 0.756432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.911547 1.27995 7.42705 0.10352 0

CAGE analysis