Hb_018954_020

Information

Type -
Description -
Location Contig18954: 24467-30287
Sequence    

Annotation

kegg
ID rcu:RCOM_0302740
description transporter, putative
nr
ID XP_012074149.1
description PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
swissprot
ID Q501H5
description Phosphatidylinositol/phosphatidylcholine transfer protein SFH13 OS=Arabidopsis thaliana GN=SFH13 PE=2 SV=1
trembl
ID A0A067KWV4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_09534 PE=4 SV=1
Gene Ontology
ID GO:0010228
description phosphatidylinositol phosphatidylcholine transfer protein sfh13

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18819: 24538-30626
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018954_020 0.0 - - PREDICTED: phosphatidylinositol/phosphatidylcholine transfer protein SFH13 [Jatropha curcas]
2 Hb_000497_230 0.0831735418 - - PREDICTED: probable protein S-acyltransferase 6 [Jatropha curcas]
3 Hb_002159_040 0.0995811697 - - hypothetical protein PRUPE_ppa001563mg [Prunus persica]
4 Hb_008406_140 0.1001540273 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
5 Hb_000566_100 0.1037661055 - - hypothetical protein JCGZ_17993 [Jatropha curcas]
6 Hb_000197_210 0.109802897 - - phosphatidylinositol transporter, putative [Ricinus communis]
7 Hb_002235_130 0.1117834775 - - conserved hypothetical protein [Ricinus communis]
8 Hb_001040_120 0.116756695 - - allantoinase, putative [Ricinus communis]
9 Hb_002249_120 0.1188975967 - - RNA-binding protein, putative [Ricinus communis]
10 Hb_007810_100 0.1234620895 - - Synaptic glycoprotein SC2, putative [Ricinus communis]
11 Hb_012404_070 0.1243586151 - - PREDICTED: uncharacterized protein LOC105629465 [Jatropha curcas]
12 Hb_003436_050 0.1264092929 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_001268_210 0.1281084395 - - zinc finger protein, putative [Ricinus communis]
14 Hb_004143_070 0.1309831613 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000797_050 0.1327761498 - - PREDICTED: uncharacterized protein LOC105645916 [Jatropha curcas]
16 Hb_003376_050 0.1333408158 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
17 Hb_000199_080 0.1350770839 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000189_510 0.138570818 - - PREDICTED: probable serine/threonine-protein kinase WNK9 [Jatropha curcas]
19 Hb_002070_070 0.1391003938 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001279_330 0.1397155301 - - Protein bem46, putative [Ricinus communis]

Gene co-expression network

sample Hb_018954_020 Hb_018954_020 Hb_000497_230 Hb_000497_230 Hb_018954_020--Hb_000497_230 Hb_002159_040 Hb_002159_040 Hb_018954_020--Hb_002159_040 Hb_008406_140 Hb_008406_140 Hb_018954_020--Hb_008406_140 Hb_000566_100 Hb_000566_100 Hb_018954_020--Hb_000566_100 Hb_000197_210 Hb_000197_210 Hb_018954_020--Hb_000197_210 Hb_002235_130 Hb_002235_130 Hb_018954_020--Hb_002235_130 Hb_000497_230--Hb_000197_210 Hb_000497_230--Hb_008406_140 Hb_001279_330 Hb_001279_330 Hb_000497_230--Hb_001279_330 Hb_004143_070 Hb_004143_070 Hb_000497_230--Hb_004143_070 Hb_000497_230--Hb_002159_040 Hb_000244_240 Hb_000244_240 Hb_002159_040--Hb_000244_240 Hb_011497_010 Hb_011497_010 Hb_002159_040--Hb_011497_010 Hb_000441_160 Hb_000441_160 Hb_002159_040--Hb_000441_160 Hb_002159_040--Hb_004143_070 Hb_002159_030 Hb_002159_030 Hb_002159_040--Hb_002159_030 Hb_000329_490 Hb_000329_490 Hb_002159_040--Hb_000329_490 Hb_008406_140--Hb_000197_210 Hb_008406_140--Hb_001279_330 Hb_000199_080 Hb_000199_080 Hb_008406_140--Hb_000199_080 Hb_008406_140--Hb_002159_040 Hb_003716_020 Hb_003716_020 Hb_008406_140--Hb_003716_020 Hb_002249_120 Hb_002249_120 Hb_000566_100--Hb_002249_120 Hb_002681_170 Hb_002681_170 Hb_000566_100--Hb_002681_170 Hb_001050_010 Hb_001050_010 Hb_000566_100--Hb_001050_010 Hb_008556_030 Hb_008556_030 Hb_000566_100--Hb_008556_030 Hb_002559_040 Hb_002559_040 Hb_000566_100--Hb_002559_040 Hb_000042_270 Hb_000042_270 Hb_000197_210--Hb_000042_270 Hb_000236_380 Hb_000236_380 Hb_000197_210--Hb_000236_380 Hb_001863_110 Hb_001863_110 Hb_000197_210--Hb_001863_110 Hb_006816_390 Hb_006816_390 Hb_000197_210--Hb_006816_390 Hb_002235_130--Hb_008406_140 Hb_002235_130--Hb_000497_230 Hb_003376_050 Hb_003376_050 Hb_002235_130--Hb_003376_050 Hb_005271_080 Hb_005271_080 Hb_002235_130--Hb_005271_080 Hb_002235_130--Hb_001279_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
15.9922 2.87651 5.90958 8.87166 12.9039 19.0037
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.25155 1.51488 4.02069 2.6656 4.28133

CAGE analysis