Hb_019026_030

Information

Type -
Description -
Location Contig19026: 18615-18983
Sequence    

Annotation

kegg
ID pop:POPTR_0001s42270g
description hypothetical protein
nr
ID KDP38987.1
description hypothetical protein JCGZ_00744 [Jatropha curcas]
swissprot
ID Q9LSQ6
description Calcium-binding protein PBP1 OS=Arabidopsis thaliana GN=PBP1 PE=1 SV=1
trembl
ID A0A067KS76
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00744 PE=4 SV=1
Gene Ontology
ID GO:0005509
description calcium-binding protein pbp1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 014_J06.ab1: 18537-19113

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019026_030 0.0 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
2 Hb_004143_050 0.1133243547 - - PREDICTED: uncharacterized protein LOC105630712 [Jatropha curcas]
3 Hb_003209_040 0.117088023 - - PREDICTED: xyloglucan endotransglucosylase/hydrolase protein 22-like [Gossypium raimondii]
4 Hb_027905_010 0.1253123812 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_001213_140 0.1308114728 - - PREDICTED: uncharacterized protein At1g04910-like [Jatropha curcas]
6 Hb_000777_020 0.1343476242 - - PREDICTED: 3-ketoacyl-CoA synthase 11 [Jatropha curcas]
7 Hb_000827_090 0.1360525933 - - PREDICTED: uncharacterized protein LOC103714121 [Phoenix dactylifera]
8 Hb_010142_040 0.1370758278 - - PREDICTED: classical arabinogalactan protein 4-like [Jatropha curcas]
9 Hb_032920_040 0.1375269002 transcription factor TF Family: C2H2 hypothetical protein POPTR_0001s30260g [Populus trichocarpa]
10 Hb_007441_150 0.1427050139 - - Ankyrin repeat family protein [Theobroma cacao]
11 Hb_002053_030 0.1459383815 - - leucine-rich repeat-containing protein, putative [Ricinus communis]
12 Hb_004241_200 0.1473339193 - - hypothetical protein JCGZ_00744 [Jatropha curcas]
13 Hb_000742_260 0.1474964403 - - hypothetical protein RCOM_1336320 [Ricinus communis]
14 Hb_000988_020 0.1475428172 - - PREDICTED: transcription factor bHLH112 isoform X2 [Jatropha curcas]
15 Hb_003023_080 0.148721764 transcription factor TF Family: ERF DNA binding protein, putative [Ricinus communis]
16 Hb_001195_650 0.1528456095 - - PREDICTED: calcium uniporter protein 4, mitochondrial [Jatropha curcas]
17 Hb_009557_050 0.1532523499 transcription factor TF Family: C2H2 zinc finger family protein [Populus trichocarpa]
18 Hb_008406_030 0.1550801629 transcription factor TF Family: ERF AP2/ERF super family protein [Hevea brasiliensis]
19 Hb_000805_150 0.1602419278 transcription factor TF Family: GRAS transcription factor, putative [Ricinus communis]
20 Hb_000003_760 0.1656372616 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA26-like [Jatropha curcas]

Gene co-expression network

sample Hb_019026_030 Hb_019026_030 Hb_004143_050 Hb_004143_050 Hb_019026_030--Hb_004143_050 Hb_003209_040 Hb_003209_040 Hb_019026_030--Hb_003209_040 Hb_027905_010 Hb_027905_010 Hb_019026_030--Hb_027905_010 Hb_001213_140 Hb_001213_140 Hb_019026_030--Hb_001213_140 Hb_000777_020 Hb_000777_020 Hb_019026_030--Hb_000777_020 Hb_000827_090 Hb_000827_090 Hb_019026_030--Hb_000827_090 Hb_000742_260 Hb_000742_260 Hb_004143_050--Hb_000742_260 Hb_000245_270 Hb_000245_270 Hb_004143_050--Hb_000245_270 Hb_003800_010 Hb_003800_010 Hb_004143_050--Hb_003800_010 Hb_000506_130 Hb_000506_130 Hb_004143_050--Hb_000506_130 Hb_029238_020 Hb_029238_020 Hb_004143_050--Hb_029238_020 Hb_003209_040--Hb_027905_010 Hb_004241_200 Hb_004241_200 Hb_003209_040--Hb_004241_200 Hb_001195_650 Hb_001195_650 Hb_003209_040--Hb_001195_650 Hb_003209_120 Hb_003209_120 Hb_003209_040--Hb_003209_120 Hb_008406_030 Hb_008406_030 Hb_003209_040--Hb_008406_030 Hb_027905_010--Hb_000777_020 Hb_027905_010--Hb_001195_650 Hb_027905_010--Hb_000827_090 Hb_010142_040 Hb_010142_040 Hb_027905_010--Hb_010142_040 Hb_001213_140--Hb_000827_090 Hb_001213_140--Hb_000777_020 Hb_000221_280 Hb_000221_280 Hb_001213_140--Hb_000221_280 Hb_001213_140--Hb_010142_040 Hb_000731_020 Hb_000731_020 Hb_001213_140--Hb_000731_020 Hb_003071_040 Hb_003071_040 Hb_001213_140--Hb_003071_040 Hb_000777_020--Hb_000827_090 Hb_000777_020--Hb_010142_040 Hb_000777_020--Hb_001195_650 Hb_005389_090 Hb_005389_090 Hb_000777_020--Hb_005389_090 Hb_000827_090--Hb_010142_040 Hb_000827_090--Hb_000221_280 Hb_032920_040 Hb_032920_040 Hb_000827_090--Hb_032920_040 Hb_000827_090--Hb_000731_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.34015 626.327 150.118 429.592 1.09003 2.21495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.3896 31.4231 31.199 19.5699 55.8157

CAGE analysis