Hb_019026_050

Information

Type -
Description -
Location Contig19026: 25239-25619
Sequence    

Annotation

kegg
ID rcu:RCOM_1227920
description hypothetical protein
nr
ID XP_002528874.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9LFQ3
description Paired amphipathic helix protein Sin3-like 2 OS=Arabidopsis thaliana GN=SNL2 PE=1 SV=2
trembl
ID B9SSA5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1227920 PE=4 SV=1
Gene Ontology
ID GO:0006355
description paired amphipathic helix protein sin3-like 2 isoform x3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019026_050 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003847_050 0.0925370069 - - PREDICTED: aquaporin SIP1-1 [Jatropha curcas]
3 Hb_023956_010 0.0938697662 - - glutathione s-transferase, putative [Ricinus communis]
4 Hb_006846_030 0.0948468667 - - respiratory burst oxidase A [Manihot esculenta]
5 Hb_002553_070 0.0981845872 - - PREDICTED: RING-H2 finger protein ATL16 [Jatropha curcas]
6 Hb_000120_320 0.1012491524 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
7 Hb_007632_130 0.1109135356 - - PREDICTED: nudix hydrolase 10-like isoform X1 [Jatropha curcas]
8 Hb_164117_010 0.1130139172 - - hypothetical protein PHAVU_004G0480000g [Phaseolus vulgaris]
9 Hb_000594_160 0.1143490058 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 8 [Jatropha curcas]
10 Hb_001189_100 0.1154348121 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 2-like [Jatropha curcas]
11 Hb_002448_020 0.1166156055 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
12 Hb_004079_100 0.1180189223 - - PREDICTED: uncharacterized protein LOC105637705 [Jatropha curcas]
13 Hb_001040_200 0.1186302809 - - PREDICTED: E3 ubiquitin-protein ligase RMA1H1-like [Jatropha curcas]
14 Hb_007625_030 0.1190362393 - - unknown [Medicago truncatula]
15 Hb_022250_160 0.1192186681 - - respiratory burst oxidase A [Manihot esculenta]
16 Hb_001568_010 0.1206351092 - - conserved hypothetical protein [Ricinus communis]
17 Hb_012787_050 0.1212344379 - - PREDICTED: glutathione S-transferase U18-like [Jatropha curcas]
18 Hb_000014_080 0.1215634903 - - PREDICTED: UDP-glycosyltransferase 87A1-like [Jatropha curcas]
19 Hb_004282_010 0.1227249582 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At2g24230 [Jatropha curcas]
20 Hb_002236_010 0.1266122421 - - PREDICTED: bidirectional sugar transporter SWEET4 [Jatropha curcas]

Gene co-expression network

sample Hb_019026_050 Hb_019026_050 Hb_003847_050 Hb_003847_050 Hb_019026_050--Hb_003847_050 Hb_023956_010 Hb_023956_010 Hb_019026_050--Hb_023956_010 Hb_006846_030 Hb_006846_030 Hb_019026_050--Hb_006846_030 Hb_002553_070 Hb_002553_070 Hb_019026_050--Hb_002553_070 Hb_000120_320 Hb_000120_320 Hb_019026_050--Hb_000120_320 Hb_007632_130 Hb_007632_130 Hb_019026_050--Hb_007632_130 Hb_003847_050--Hb_023956_010 Hb_003847_050--Hb_006846_030 Hb_001568_010 Hb_001568_010 Hb_003847_050--Hb_001568_010 Hb_012787_050 Hb_012787_050 Hb_003847_050--Hb_012787_050 Hb_002448_020 Hb_002448_020 Hb_003847_050--Hb_002448_020 Hb_023956_010--Hb_002553_070 Hb_023956_010--Hb_006846_030 Hb_023956_010--Hb_012787_050 Hb_002236_010 Hb_002236_010 Hb_023956_010--Hb_002236_010 Hb_006846_030--Hb_012787_050 Hb_006846_030--Hb_001568_010 Hb_006846_030--Hb_002448_020 Hb_002553_070--Hb_002236_010 Hb_000571_060 Hb_000571_060 Hb_002553_070--Hb_000571_060 Hb_005679_120 Hb_005679_120 Hb_002553_070--Hb_005679_120 Hb_002553_070--Hb_006846_030 Hb_149055_010 Hb_149055_010 Hb_000120_320--Hb_149055_010 Hb_000181_260 Hb_000181_260 Hb_000120_320--Hb_000181_260 Hb_001677_090 Hb_001677_090 Hb_000120_320--Hb_001677_090 Hb_002641_140 Hb_002641_140 Hb_000120_320--Hb_002641_140 Hb_001138_070 Hb_001138_070 Hb_000120_320--Hb_001138_070 Hb_032260_130 Hb_032260_130 Hb_007632_130--Hb_032260_130 Hb_007632_130--Hb_006846_030 Hb_007632_130--Hb_000120_320 Hb_007632_130--Hb_002553_070 Hb_164117_010 Hb_164117_010 Hb_007632_130--Hb_164117_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0922478 4.6332 4.49123 13.9036 0 0.0844272
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0.271261 10.6617 5.3545

CAGE analysis