Hb_019033_010

Information

Type -
Description -
Location Contig19033: 12140-12604
Sequence    

Annotation

kegg
ID rcu:RCOM_1101280
description protein transporter, putative
nr
ID XP_012083898.1
description PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19481 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019033_010 0.0 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
2 Hb_000699_110 0.1496127244 - - hypothetical protein POPTR_0013s04180g [Populus trichocarpa]
3 Hb_004502_080 0.1551362796 - - hypothetical protein JCGZ_23578 [Jatropha curcas]
4 Hb_001437_050 0.1556771434 - - PREDICTED: ABC transporter G family member 28 [Jatropha curcas]
5 Hb_000175_040 0.1669536872 - - hypothetical protein JCGZ_06119 [Jatropha curcas]
6 Hb_068804_150 0.1754451431 - - conserved hypothetical protein [Ricinus communis]
7 Hb_074197_010 0.1755715652 - - PREDICTED: methylsterol monooxygenase 1-1-like [Jatropha curcas]
8 Hb_001623_240 0.1847565545 - - hypothetical protein VITISV_004933 [Vitis vinifera]
9 Hb_002301_240 0.1850438846 - - auxin-repressed protein-like protein ARP1 [Manihot esculenta]
10 Hb_002301_290 0.1871915285 transcription factor TF Family: SBP Squamosa promoter-binding protein, putative [Ricinus communis]
11 Hb_025246_010 0.1894583708 - - -
12 Hb_003057_050 0.1918325258 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
13 Hb_002233_110 0.194742179 - - PREDICTED: nuclear transcription factor Y subunit B-3-like [Jatropha curcas]
14 Hb_011242_030 0.1954930634 - - -
15 Hb_003057_130 0.200144054 - - -
16 Hb_004108_080 0.2030468911 - - PREDICTED: endo-1,3;1,4-beta-D-glucanase [Vitis vinifera]
17 Hb_000445_330 0.2039118065 - - conserved hypothetical protein [Ricinus communis]
18 Hb_011931_050 0.2056185123 - - fk506-binding protein, putative [Ricinus communis]
19 Hb_002835_220 0.2070746608 - - PREDICTED: MATE efflux family protein 7 [Vitis vinifera]
20 Hb_000788_120 0.2083735565 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPS2-like [Eucalyptus grandis]

Gene co-expression network

sample Hb_019033_010 Hb_019033_010 Hb_000699_110 Hb_000699_110 Hb_019033_010--Hb_000699_110 Hb_004502_080 Hb_004502_080 Hb_019033_010--Hb_004502_080 Hb_001437_050 Hb_001437_050 Hb_019033_010--Hb_001437_050 Hb_000175_040 Hb_000175_040 Hb_019033_010--Hb_000175_040 Hb_068804_150 Hb_068804_150 Hb_019033_010--Hb_068804_150 Hb_074197_010 Hb_074197_010 Hb_019033_010--Hb_074197_010 Hb_025246_010 Hb_025246_010 Hb_000699_110--Hb_025246_010 Hb_001623_240 Hb_001623_240 Hb_000699_110--Hb_001623_240 Hb_000261_510 Hb_000261_510 Hb_000699_110--Hb_000261_510 Hb_000699_110--Hb_000175_040 Hb_003057_050 Hb_003057_050 Hb_000699_110--Hb_003057_050 Hb_004724_140 Hb_004724_140 Hb_000699_110--Hb_004724_140 Hb_004502_080--Hb_000175_040 Hb_029888_020 Hb_029888_020 Hb_004502_080--Hb_029888_020 Hb_004502_080--Hb_003057_050 Hb_003057_130 Hb_003057_130 Hb_004502_080--Hb_003057_130 Hb_004502_080--Hb_025246_010 Hb_002233_110 Hb_002233_110 Hb_001437_050--Hb_002233_110 Hb_000091_100 Hb_000091_100 Hb_001437_050--Hb_000091_100 Hb_011242_030 Hb_011242_030 Hb_001437_050--Hb_011242_030 Hb_001437_050--Hb_004502_080 Hb_000567_280 Hb_000567_280 Hb_001437_050--Hb_000567_280 Hb_000175_040--Hb_003057_130 Hb_000175_040--Hb_025246_010 Hb_000788_120 Hb_000788_120 Hb_000175_040--Hb_000788_120 Hb_007625_020 Hb_007625_020 Hb_000175_040--Hb_007625_020 Hb_029921_010 Hb_029921_010 Hb_068804_150--Hb_029921_010 Hb_000390_200 Hb_000390_200 Hb_068804_150--Hb_000390_200 Hb_005271_170 Hb_005271_170 Hb_068804_150--Hb_005271_170 Hb_068804_150--Hb_000699_110 Hb_000065_080 Hb_000065_080 Hb_068804_150--Hb_000065_080 Hb_002603_130 Hb_002603_130 Hb_074197_010--Hb_002603_130 Hb_005892_060 Hb_005892_060 Hb_074197_010--Hb_005892_060 Hb_002301_290 Hb_002301_290 Hb_074197_010--Hb_002301_290 Hb_026428_010 Hb_026428_010 Hb_074197_010--Hb_026428_010 Hb_002471_100 Hb_002471_100 Hb_074197_010--Hb_002471_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.9777 2.85273 3.39316 2.68598 4.47434 9.9194
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
38.511 14.4108 1.9857 1.79591 2.18829

CAGE analysis