Hb_019040_030

Information

Type -
Description -
Location Contig19040: 20444-22194
Sequence    

Annotation

kegg
ID rcu:RCOM_1451430
description Ribosome-binding factor A, putative
nr
ID XP_012084421.1
description PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
swissprot
ID O65693
description Probable ribosome-binding factor A, chloroplastic OS=Arabidopsis thaliana GN=At4g34730 PE=2 SV=2
trembl
ID A0A067K5U5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19630 PE=3 SV=1
Gene Ontology
ID GO:0006364
description probable ribosome-binding factor chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18995: 20450-25576
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019040_030 0.0 - - PREDICTED: probable ribosome-binding factor A, chloroplastic [Jatropha curcas]
2 Hb_000914_100 0.0956059181 - - unknown [Glycine max]
3 Hb_001898_180 0.1048510795 - - PREDICTED: translation initiation factor IF-1, chloroplastic [Jatropha curcas]
4 Hb_007632_170 0.1185090731 - - hypothetical protein JCGZ_01028 [Jatropha curcas]
5 Hb_000077_150 0.1208598067 - - PREDICTED: riboflavin synthase [Jatropha curcas]
6 Hb_000156_210 0.1227033827 - - PREDICTED: metal transporter Nramp1 [Jatropha curcas]
7 Hb_001214_050 0.1332346518 - - PREDICTED: bifunctional monothiol glutaredoxin-S16, chloroplastic [Jatropha curcas]
8 Hb_020025_010 0.1335963148 - - PREDICTED: xyloglucan galactosyltransferase KATAMARI1 homolog [Jatropha curcas]
9 Hb_003020_260 0.1353909746 - - PREDICTED: metal tolerance protein B [Jatropha curcas]
10 Hb_012627_040 0.1367290541 - - PREDICTED: uncharacterized protein LOC105641988 [Jatropha curcas]
11 Hb_140627_010 0.140511881 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000983_070 0.1421219388 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003544_010 0.1432896231 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit A, chloroplastic/mitochondrial [Jatropha curcas]
14 Hb_000189_450 0.1448463382 - - Zeta-carotene desaturase, chloroplast precursor, putative [Ricinus communis]
15 Hb_002811_010 0.1474377167 - - cysteine synthase, putative [Ricinus communis]
16 Hb_100886_010 0.148999398 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_005731_160 0.150575669 - - ABC transporter family protein [Hevea brasiliensis]
18 Hb_000622_290 0.1518393486 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
19 Hb_003106_190 0.1535400151 - - Mannosyl-oligosaccharide 1,2-alpha-mannosidase IA, putative [Ricinus communis]
20 Hb_001240_010 0.154631063 - - PREDICTED: uncharacterized protein LOC105634101 [Jatropha curcas]

Gene co-expression network

sample Hb_019040_030 Hb_019040_030 Hb_000914_100 Hb_000914_100 Hb_019040_030--Hb_000914_100 Hb_001898_180 Hb_001898_180 Hb_019040_030--Hb_001898_180 Hb_007632_170 Hb_007632_170 Hb_019040_030--Hb_007632_170 Hb_000077_150 Hb_000077_150 Hb_019040_030--Hb_000077_150 Hb_000156_210 Hb_000156_210 Hb_019040_030--Hb_000156_210 Hb_001214_050 Hb_001214_050 Hb_019040_030--Hb_001214_050 Hb_008147_080 Hb_008147_080 Hb_000914_100--Hb_008147_080 Hb_000914_100--Hb_000077_150 Hb_002900_110 Hb_002900_110 Hb_000914_100--Hb_002900_110 Hb_002811_010 Hb_002811_010 Hb_000914_100--Hb_002811_010 Hb_000197_220 Hb_000197_220 Hb_000914_100--Hb_000197_220 Hb_000983_070 Hb_000983_070 Hb_001898_180--Hb_000983_070 Hb_002053_010 Hb_002053_010 Hb_001898_180--Hb_002053_010 Hb_020378_060 Hb_020378_060 Hb_001898_180--Hb_020378_060 Hb_000189_450 Hb_000189_450 Hb_001898_180--Hb_000189_450 Hb_001898_180--Hb_007632_170 Hb_000622_290 Hb_000622_290 Hb_001898_180--Hb_000622_290 Hb_005846_030 Hb_005846_030 Hb_007632_170--Hb_005846_030 Hb_010577_040 Hb_010577_040 Hb_007632_170--Hb_010577_040 Hb_007632_170--Hb_000156_210 Hb_002078_300 Hb_002078_300 Hb_007632_170--Hb_002078_300 Hb_004644_030 Hb_004644_030 Hb_000077_150--Hb_004644_030 Hb_002762_110 Hb_002762_110 Hb_000077_150--Hb_002762_110 Hb_000077_150--Hb_001214_050 Hb_003106_190 Hb_003106_190 Hb_000077_150--Hb_003106_190 Hb_002078_340 Hb_002078_340 Hb_000077_150--Hb_002078_340 Hb_000077_150--Hb_002811_010 Hb_000191_080 Hb_000191_080 Hb_000156_210--Hb_000191_080 Hb_000156_210--Hb_005846_030 Hb_008698_010 Hb_008698_010 Hb_000156_210--Hb_008698_010 Hb_000156_210--Hb_002078_300 Hb_001214_050--Hb_002762_110 Hb_009778_060 Hb_009778_060 Hb_001214_050--Hb_009778_060 Hb_001723_060 Hb_001723_060 Hb_001214_050--Hb_001723_060 Hb_000032_500 Hb_000032_500 Hb_001214_050--Hb_000032_500 Hb_001195_770 Hb_001195_770 Hb_001214_050--Hb_001195_770
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52663 5.40545 6.84528 11.9364 5.12176 5.58295
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
11.5008 19.9581 6.03403 10.8971 37.6473

CAGE analysis