Hb_019053_040

Information

Type -
Description -
Location Contig19053: 34229-35737
Sequence    

Annotation

kegg
ID rcu:RCOM_1677340
description cytochrome P450, putative (EC:1.14.14.1)
nr
ID XP_002509524.1
description cytochrome P450, putative [Ricinus communis]
swissprot
ID Q9FMV7
description Cytochrome P450 94B1 OS=Arabidopsis thaliana GN=CYP94B1 PE=2 SV=1
trembl
ID B9RBJ0
description Cytochrome P450, putative OS=Ricinus communis GN=RCOM_1677340 PE=3 SV=1
Gene Ontology
ID GO:0005506
description cytochrome p450 94b3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19000: 34874-35214 , PASA_asmbl_19001: 35227-35478
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019053_040 0.0 - - cytochrome P450, putative [Ricinus communis]
2 Hb_023582_010 0.0356852393 - - conserved hypothetical protein [Ricinus communis]
3 Hb_000282_020 0.0541920121 transcription factor TF Family: MYB-related conserved hypothetical protein [Ricinus communis]
4 Hb_001166_010 0.060276022 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
5 Hb_105148_020 0.0605432719 - - PREDICTED: lysosomal Pro-X carboxypeptidase [Jatropha curcas]
6 Hb_023827_030 0.0713365237 - - PREDICTED: thylakoid lumenal 16.5 kDa protein, chloroplastic-like [Populus euphratica]
7 Hb_002066_100 0.0730852876 - - PREDICTED: protein disulfide-isomerase SCO2 [Jatropha curcas]
8 Hb_016297_010 0.0731880276 - - PREDICTED: uncharacterized protein LOC105638665 [Jatropha curcas]
9 Hb_000722_030 0.0764936124 - - putative plant disease resistance family protein [Populus trichocarpa]
10 Hb_000005_060 0.078295979 - - PREDICTED: uncharacterized protein At1g08160 [Jatropha curcas]
11 Hb_000069_440 0.0812444354 - - PREDICTED: uncharacterized protein LOC105642861 [Jatropha curcas]
12 Hb_001266_010 0.0833752187 - - PREDICTED: uncharacterized protein LOC101206474 [Cucumis sativus]
13 Hb_007853_030 0.0841849635 - - structural molecule, putative [Ricinus communis]
14 Hb_005460_040 0.0898543719 - - PREDICTED: long chain acyl-CoA synthetase 2 [Jatropha curcas]
15 Hb_006620_030 0.0906020356 - - nitrate reductase, putative [Ricinus communis]
16 Hb_007681_010 0.091968848 - - hypothetical protein RCOM_2128750 [Ricinus communis]
17 Hb_004411_010 0.0942245105 - - PREDICTED: NADP-dependent alkenal double bond reductase P2-like isoform X5 [Gossypium raimondii]
18 Hb_001258_130 0.0949521597 - - PREDICTED: kinesin-like protein KIF19 [Jatropha curcas]
19 Hb_009476_030 0.0949854835 - - fatty acid desaturase [Manihot esculenta]
20 Hb_002044_100 0.0953312213 - - PREDICTED: uncharacterized protein LOC105643555 [Jatropha curcas]

Gene co-expression network

sample Hb_019053_040 Hb_019053_040 Hb_023582_010 Hb_023582_010 Hb_019053_040--Hb_023582_010 Hb_000282_020 Hb_000282_020 Hb_019053_040--Hb_000282_020 Hb_001166_010 Hb_001166_010 Hb_019053_040--Hb_001166_010 Hb_105148_020 Hb_105148_020 Hb_019053_040--Hb_105148_020 Hb_023827_030 Hb_023827_030 Hb_019053_040--Hb_023827_030 Hb_002066_100 Hb_002066_100 Hb_019053_040--Hb_002066_100 Hb_000722_030 Hb_000722_030 Hb_023582_010--Hb_000722_030 Hb_023582_010--Hb_000282_020 Hb_016297_010 Hb_016297_010 Hb_023582_010--Hb_016297_010 Hb_000005_060 Hb_000005_060 Hb_023582_010--Hb_000005_060 Hb_023582_010--Hb_105148_020 Hb_000069_440 Hb_000069_440 Hb_000282_020--Hb_000069_440 Hb_004411_010 Hb_004411_010 Hb_000282_020--Hb_004411_010 Hb_000282_020--Hb_000005_060 Hb_000282_020--Hb_023827_030 Hb_007853_030 Hb_007853_030 Hb_001166_010--Hb_007853_030 Hb_000144_130 Hb_000144_130 Hb_001166_010--Hb_000144_130 Hb_002044_100 Hb_002044_100 Hb_001166_010--Hb_002044_100 Hb_031377_010 Hb_031377_010 Hb_001166_010--Hb_031377_010 Hb_000510_250 Hb_000510_250 Hb_001166_010--Hb_000510_250 Hb_006620_030 Hb_006620_030 Hb_105148_020--Hb_006620_030 Hb_105148_020--Hb_001166_010 Hb_001258_130 Hb_001258_130 Hb_105148_020--Hb_001258_130 Hb_105148_020--Hb_023827_030 Hb_023827_030--Hb_000069_440 Hb_023827_030--Hb_016297_010 Hb_023827_030--Hb_023582_010 Hb_002066_100--Hb_000722_030 Hb_002066_100--Hb_023582_010 Hb_002066_100--Hb_001258_130 Hb_027684_010 Hb_027684_010 Hb_002066_100--Hb_027684_010 Hb_001511_210 Hb_001511_210 Hb_002066_100--Hb_001511_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0609135 1.37687 0.489532 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0292164 0.714831

CAGE analysis