Hb_019113_020

Information

Type -
Description -
Location Contig19113: 16476-27525
Sequence    

Annotation

kegg
ID pop:POPTR_0013s15750g
description POPTRDRAFT_807189; Light-mediated development protein DET1
nr
ID KDP32473.1
description hypothetical protein JCGZ_13398 [Jatropha curcas]
swissprot
ID Q9ZNU6
description Light-mediated development protein DET1 OS=Solanum lycopersicum GN=DET1 PE=1 SV=1
trembl
ID A0A067KBR8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13398 PE=4 SV=1
Gene Ontology
ID GO:0003824
description light-mediated development protein det1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19063: 16612-27443 , PASA_asmbl_19064: 20436-20719 , PASA_asmbl_19065: 20797-21070 , PASA_asmbl_19066: 26058-26280
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019113_020 0.0 - - hypothetical protein JCGZ_13398 [Jatropha curcas]
2 Hb_003050_250 0.067794555 - - PREDICTED: uncharacterized protein At2g34460, chloroplastic [Jatropha curcas]
3 Hb_161175_010 0.0819621261 - - PREDICTED: vesicle-associated protein 1-1 [Jatropha curcas]
4 Hb_002503_020 0.0887805391 - - Phosphatase 2C family protein, putative [Theobroma cacao]
5 Hb_000125_210 0.0949478865 - - PREDICTED: electron transfer flavoprotein-ubiquinone oxidoreductase, mitochondrial [Jatropha curcas]
6 Hb_004125_040 0.0983755328 - - -
7 Hb_000318_160 0.0985456721 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]
8 Hb_000436_030 0.0993223714 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000853_190 0.0994102098 - - mitochondrial carrier protein, putative [Ricinus communis]
10 Hb_000096_150 0.101106768 - - NADH-ubiquinone oxidoreductase 18 kDa subunit, mitochondrial precursor, putative [Ricinus communis]
11 Hb_000403_070 0.1056009918 - - PREDICTED: iron-sulfur assembly protein IscA, chloroplastic isoform X1 [Jatropha curcas]
12 Hb_003050_280 0.1056598921 transcription factor TF Family: HMG DNA-binding protein MNB1B, putative [Ricinus communis]
13 Hb_000617_200 0.1064796996 - - f-actin capping protein alpha, putative [Ricinus communis]
14 Hb_001728_060 0.1081118484 - - PREDICTED: uncharacterized protein LOC105632289 [Jatropha curcas]
15 Hb_001575_060 0.1087058682 - - PREDICTED: 2-methoxy-6-polyprenyl-1,4-benzoquinol methylase, mitochondrial-like [Jatropha curcas]
16 Hb_011512_040 0.111176877 - - PREDICTED: NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13-B [Jatropha curcas]
17 Hb_000673_020 0.1121584934 - - PREDICTED: ATP synthase subunit delta', mitochondrial [Jatropha curcas]
18 Hb_068056_030 0.1146540755 - - ATP synthase epsilon chain, mitochondrial, putative [Ricinus communis]
19 Hb_011381_080 0.1153958741 - - PREDICTED: probable protein phosphatase 2C 59 [Jatropha curcas]
20 Hb_000436_130 0.1160953951 - - PREDICTED: probable protein phosphatase 2C 60 [Jatropha curcas]

Gene co-expression network

sample Hb_019113_020 Hb_019113_020 Hb_003050_250 Hb_003050_250 Hb_019113_020--Hb_003050_250 Hb_161175_010 Hb_161175_010 Hb_019113_020--Hb_161175_010 Hb_002503_020 Hb_002503_020 Hb_019113_020--Hb_002503_020 Hb_000125_210 Hb_000125_210 Hb_019113_020--Hb_000125_210 Hb_004125_040 Hb_004125_040 Hb_019113_020--Hb_004125_040 Hb_000318_160 Hb_000318_160 Hb_019113_020--Hb_000318_160 Hb_003050_250--Hb_004125_040 Hb_001575_060 Hb_001575_060 Hb_003050_250--Hb_001575_060 Hb_001240_010 Hb_001240_010 Hb_003050_250--Hb_001240_010 Hb_001728_060 Hb_001728_060 Hb_003050_250--Hb_001728_060 Hb_000403_070 Hb_000403_070 Hb_003050_250--Hb_000403_070 Hb_161175_010--Hb_000125_210 Hb_000175_030 Hb_000175_030 Hb_161175_010--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_161175_010--Hb_000705_290 Hb_003849_150 Hb_003849_150 Hb_161175_010--Hb_003849_150 Hb_000673_020 Hb_000673_020 Hb_161175_010--Hb_000673_020 Hb_002503_020--Hb_000125_210 Hb_002503_020--Hb_161175_010 Hb_000733_180 Hb_000733_180 Hb_002503_020--Hb_000733_180 Hb_000853_190 Hb_000853_190 Hb_002503_020--Hb_000853_190 Hb_000617_200 Hb_000617_200 Hb_002503_020--Hb_000617_200 Hb_000125_210--Hb_000673_020 Hb_000096_150 Hb_000096_150 Hb_000125_210--Hb_000096_150 Hb_000125_210--Hb_000318_160 Hb_003349_080 Hb_003349_080 Hb_000125_210--Hb_003349_080 Hb_000125_210--Hb_000175_030 Hb_003050_280 Hb_003050_280 Hb_004125_040--Hb_003050_280 Hb_001491_010 Hb_001491_010 Hb_004125_040--Hb_001491_010 Hb_021576_030 Hb_021576_030 Hb_004125_040--Hb_021576_030 Hb_007576_170 Hb_007576_170 Hb_004125_040--Hb_007576_170 Hb_000318_160--Hb_003349_080 Hb_000318_160--Hb_003050_280 Hb_000224_140 Hb_000224_140 Hb_000318_160--Hb_000224_140 Hb_068056_030 Hb_068056_030 Hb_000318_160--Hb_068056_030 Hb_000928_130 Hb_000928_130 Hb_000318_160--Hb_000928_130 Hb_000445_490 Hb_000445_490 Hb_000318_160--Hb_000445_490
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.63582 3.65511 8.82944 13.3723 5.27074 9.34312
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
19.3632 30.3603 27.4014 8.53825 22.9597

CAGE analysis