Hb_019135_010

Information

Type -
Description -
Location Contig19135: 899-2570
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019135_010 0.0 - - -
2 Hb_007632_140 0.016231346 - - -
3 Hb_000362_100 0.0408996066 - - -
4 Hb_002121_070 0.0700402251 - - conserved hypothetical protein [Ricinus communis]
5 Hb_106274_010 0.0766732453 - - hypothetical protein VITISV_008825 [Vitis vinifera]
6 Hb_000367_150 0.0905511967 - - -
7 Hb_001231_020 0.0940078943 - - -
8 Hb_043960_010 0.1010023815 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_005714_120 0.1029182085 - - nucleic acid binding protein, putative [Ricinus communis]
10 Hb_011987_010 0.1038756837 - - PREDICTED: uncharacterized protein LOC105634770 [Jatropha curcas]
11 Hb_005551_030 0.1087526392 - - PREDICTED: mediator of RNA polymerase II transcription subunit 27 [Jatropha curcas]
12 Hb_005021_040 0.1128896151 - - PREDICTED: uncharacterized protein LOC103848240 [Brassica rapa]
13 Hb_007456_030 0.1150829015 - - -
14 Hb_005666_030 0.1233772018 - - PREDICTED: uncharacterized protein LOC103489421 [Cucumis melo]
15 Hb_001691_130 0.1253474077 - - PREDICTED: uncharacterized protein LOC104587431 [Nelumbo nucifera]
16 Hb_004968_090 0.1260286314 - - PREDICTED: uncharacterized protein LOC104882781 [Vitis vinifera]
17 Hb_036731_010 0.1261145556 - - -
18 Hb_001514_140 0.1354311586 - - -
19 Hb_005337_010 0.1366030929 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]
20 Hb_001699_020 0.138137071 - - hypothetical protein L484_026849 [Morus notabilis]

Gene co-expression network

sample Hb_019135_010 Hb_019135_010 Hb_007632_140 Hb_007632_140 Hb_019135_010--Hb_007632_140 Hb_000362_100 Hb_000362_100 Hb_019135_010--Hb_000362_100 Hb_002121_070 Hb_002121_070 Hb_019135_010--Hb_002121_070 Hb_106274_010 Hb_106274_010 Hb_019135_010--Hb_106274_010 Hb_000367_150 Hb_000367_150 Hb_019135_010--Hb_000367_150 Hb_001231_020 Hb_001231_020 Hb_019135_010--Hb_001231_020 Hb_007632_140--Hb_000362_100 Hb_007632_140--Hb_002121_070 Hb_005714_120 Hb_005714_120 Hb_007632_140--Hb_005714_120 Hb_007632_140--Hb_106274_010 Hb_005021_040 Hb_005021_040 Hb_007632_140--Hb_005021_040 Hb_000362_100--Hb_002121_070 Hb_000362_100--Hb_005714_120 Hb_036731_010 Hb_036731_010 Hb_000362_100--Hb_036731_010 Hb_043960_010 Hb_043960_010 Hb_000362_100--Hb_043960_010 Hb_002121_070--Hb_005714_120 Hb_002121_070--Hb_036731_010 Hb_166210_010 Hb_166210_010 Hb_002121_070--Hb_166210_010 Hb_106274_010--Hb_001231_020 Hb_005551_030 Hb_005551_030 Hb_106274_010--Hb_005551_030 Hb_005666_030 Hb_005666_030 Hb_106274_010--Hb_005666_030 Hb_004968_090 Hb_004968_090 Hb_106274_010--Hb_004968_090 Hb_001691_130 Hb_001691_130 Hb_106274_010--Hb_001691_130 Hb_011987_010 Hb_011987_010 Hb_106274_010--Hb_011987_010 Hb_007456_030 Hb_007456_030 Hb_000367_150--Hb_007456_030 Hb_000367_150--Hb_001691_130 Hb_000367_150--Hb_001231_020 Hb_000367_150--Hb_106274_010 Hb_002630_030 Hb_002630_030 Hb_000367_150--Hb_002630_030 Hb_000367_150--Hb_005551_030 Hb_001231_020--Hb_005551_030 Hb_001231_020--Hb_005666_030 Hb_001231_020--Hb_004968_090 Hb_001231_020--Hb_001691_130 Hb_001231_020--Hb_002630_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0169476 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0154973 0.0790344

CAGE analysis