Hb_019153_020

Information

Type -
Description -
Location Contig19153: 12949-19653
Sequence    

Annotation

kegg
ID rcu:RCOM_0410480
description nucleic acid binding protein, putative
nr
ID XP_012081696.1
description PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
swissprot
ID P58223
description KH domain-containing protein At4g18375 OS=Arabidopsis thaliana GN=At4g18375 PE=2 SV=1
trembl
ID A0A067K0Z7
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18727 PE=4 SV=1
Gene Ontology
ID GO:0003676
description nucleic acid binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19105: 13002-19598
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019153_020 0.0 - - PREDICTED: KH domain-containing protein At4g18375 isoform X2 [Jatropha curcas]
2 Hb_000032_010 0.0488591725 - - crooked neck protein, putative [Ricinus communis]
3 Hb_140049_020 0.0538930963 - - PREDICTED: cell division cycle protein 73 [Jatropha curcas]
4 Hb_000417_160 0.0603878763 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g45780 [Jatropha curcas]
5 Hb_002221_050 0.0606863343 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP65 isoform X1 [Jatropha curcas]
6 Hb_000529_260 0.0619441021 - - PREDICTED: protein SGT1 homolog At5g65490 [Jatropha curcas]
7 Hb_010315_090 0.0622866815 - - suppressor of ty, putative [Ricinus communis]
8 Hb_000856_140 0.0627546545 - - PREDICTED: uncharacterized protein LOC105640478 isoform X1 [Jatropha curcas]
9 Hb_003777_160 0.0630724856 transcription factor TF Family: bZIP PREDICTED: G-box-binding factor 4 isoform X1 [Jatropha curcas]
10 Hb_000320_380 0.0633240794 - - PREDICTED: uncharacterized protein LOC105649330 isoform X2 [Jatropha curcas]
11 Hb_007885_070 0.0634199841 - - cleavage and polyadenylation specificity factor, putative [Ricinus communis]
12 Hb_003040_020 0.0662426303 - - PREDICTED: protein cereblon [Jatropha curcas]
13 Hb_005539_190 0.0707121353 - - PREDICTED: U4/U6 small nuclear ribonucleoprotein Prp31 [Jatropha curcas]
14 Hb_004635_050 0.0708872353 - - nucleolar phosphoprotein, putative [Ricinus communis]
15 Hb_004429_160 0.0756913763 - - PREDICTED: serine/threonine-protein kinase TAO3 isoform X1 [Jatropha curcas]
16 Hb_000510_310 0.075864649 transcription factor TF Family: bHLH PREDICTED: transcription factor UNE12-like [Jatropha curcas]
17 Hb_033883_060 0.0761773214 - - PREDICTED: uncharacterized protein LOC105648353 [Jatropha curcas]
18 Hb_000120_610 0.0765831545 - - mitotic control protein dis3, putative [Ricinus communis]
19 Hb_000329_130 0.0767801601 - - beta-tubulin cofactor d, putative [Ricinus communis]
20 Hb_000753_100 0.0768706704 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105640677 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_019153_020 Hb_019153_020 Hb_000032_010 Hb_000032_010 Hb_019153_020--Hb_000032_010 Hb_140049_020 Hb_140049_020 Hb_019153_020--Hb_140049_020 Hb_000417_160 Hb_000417_160 Hb_019153_020--Hb_000417_160 Hb_002221_050 Hb_002221_050 Hb_019153_020--Hb_002221_050 Hb_000529_260 Hb_000529_260 Hb_019153_020--Hb_000529_260 Hb_010315_090 Hb_010315_090 Hb_019153_020--Hb_010315_090 Hb_003040_020 Hb_003040_020 Hb_000032_010--Hb_003040_020 Hb_004429_160 Hb_004429_160 Hb_000032_010--Hb_004429_160 Hb_000753_100 Hb_000753_100 Hb_000032_010--Hb_000753_100 Hb_000191_130 Hb_000191_130 Hb_000032_010--Hb_000191_130 Hb_000856_140 Hb_000856_140 Hb_000032_010--Hb_000856_140 Hb_000313_340 Hb_000313_340 Hb_140049_020--Hb_000313_340 Hb_005539_190 Hb_005539_190 Hb_140049_020--Hb_005539_190 Hb_000329_130 Hb_000329_130 Hb_140049_020--Hb_000329_130 Hb_007229_040 Hb_007229_040 Hb_140049_020--Hb_007229_040 Hb_000363_130 Hb_000363_130 Hb_140049_020--Hb_000363_130 Hb_007885_070 Hb_007885_070 Hb_000417_160--Hb_007885_070 Hb_000510_310 Hb_000510_310 Hb_000417_160--Hb_000510_310 Hb_147737_010 Hb_147737_010 Hb_000417_160--Hb_147737_010 Hb_000417_160--Hb_002221_050 Hb_000417_160--Hb_000329_130 Hb_000320_380 Hb_000320_380 Hb_002221_050--Hb_000320_380 Hb_000424_010 Hb_000424_010 Hb_002221_050--Hb_000424_010 Hb_002221_050--Hb_007885_070 Hb_002221_050--Hb_000529_260 Hb_000320_200 Hb_000320_200 Hb_002221_050--Hb_000320_200 Hb_015026_050 Hb_015026_050 Hb_002221_050--Hb_015026_050 Hb_000529_260--Hb_000424_010 Hb_000529_260--Hb_007885_070 Hb_000529_260--Hb_000510_310 Hb_000529_260--Hb_000320_200 Hb_010315_090--Hb_000329_130 Hb_001417_050 Hb_001417_050 Hb_010315_090--Hb_001417_050 Hb_001493_040 Hb_001493_040 Hb_010315_090--Hb_001493_040 Hb_004884_010 Hb_004884_010 Hb_010315_090--Hb_004884_010 Hb_010315_090--Hb_140049_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
25.8843 23.9473 10.9899 8.45202 31.6664 21.3075
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.918 6.84389 12.6803 14.9305 10.5737

CAGE analysis