Hb_019181_040

Information

Type -
Description -
Location Contig19181: 48451-58094
Sequence    

Annotation

kegg
ID rcu:RCOM_0867860
description component of oligomeric golgi complex, putative
nr
ID XP_002519941.1
description component of oligomeric golgi complex, putative [Ricinus communis]
swissprot
ID Q3SZI7
description Conserved oligomeric Golgi complex subunit 6 OS=Bos taurus GN=COG6 PE=2 SV=1
trembl
ID B9S1S6
description Component of oligomeric golgi complex, putative OS=Ricinus communis GN=RCOM_0867860 PE=4 SV=1
Gene Ontology
ID GO:0017119
description conserved oligomeric golgi complex subunit 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_19130: 34895-58081 , PASA_asmbl_19133: 35328-58081
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019181_040 0.0 - - component of oligomeric golgi complex, putative [Ricinus communis]
2 Hb_000046_500 0.0538397811 - - PREDICTED: probable serine/threonine-protein phosphatase 2A regulatory subunit B'' subunit TON2 [Jatropha curcas]
3 Hb_000349_260 0.0667088912 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
4 Hb_000317_040 0.0685335709 - - PREDICTED: xylosyltransferase 1-like [Jatropha curcas]
5 Hb_004754_050 0.0717296252 - - PREDICTED: uncharacterized protein LOC104433925 [Eucalyptus grandis]
6 Hb_000703_190 0.0735187722 - - PREDICTED: serine/threonine-protein kinase EDR1 isoform X1 [Jatropha curcas]
7 Hb_001269_330 0.0739515393 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
8 Hb_000256_150 0.0758742572 - - PREDICTED: trafficking protein particle complex II-specific subunit 120 homolog [Jatropha curcas]
9 Hb_001512_040 0.077129579 - - PREDICTED: probable methyltransferase PMT9 [Jatropha curcas]
10 Hb_079526_040 0.0784254846 - - Conserved oligomeric Golgi complex component, putative [Ricinus communis]
11 Hb_004108_160 0.0784254978 - - PREDICTED: myosin heavy chain, non-muscle-like [Jatropha curcas]
12 Hb_010515_020 0.0787734716 - - PREDICTED: protein transport protein SEC23-like [Jatropha curcas]
13 Hb_008279_040 0.0794190952 - - Rer1 family protein isoform 2 [Theobroma cacao]
14 Hb_001912_110 0.0797603081 - - PREDICTED: protoheme IX farnesyltransferase, mitochondrial isoform X1 [Jatropha curcas]
15 Hb_002326_040 0.0804173424 transcription factor TF Family: B3 PREDICTED: B3 domain-containing protein Os01g0723500-like [Jatropha curcas]
16 Hb_003025_100 0.0813058779 - - PREDICTED: serine/threonine-protein phosphatase 5 isoform X2 [Jatropha curcas]
17 Hb_002071_070 0.0814420827 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
18 Hb_002830_010 0.0828994088 - - PREDICTED: TBCC domain-containing protein 1 [Jatropha curcas]
19 Hb_005650_010 0.0830695029 - - ATP binding protein, putative [Ricinus communis]
20 Hb_001259_050 0.083652684 - - calcium lipid binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_019181_040 Hb_019181_040 Hb_000046_500 Hb_000046_500 Hb_019181_040--Hb_000046_500 Hb_000349_260 Hb_000349_260 Hb_019181_040--Hb_000349_260 Hb_000317_040 Hb_000317_040 Hb_019181_040--Hb_000317_040 Hb_004754_050 Hb_004754_050 Hb_019181_040--Hb_004754_050 Hb_000703_190 Hb_000703_190 Hb_019181_040--Hb_000703_190 Hb_001269_330 Hb_001269_330 Hb_019181_040--Hb_001269_330 Hb_007481_010 Hb_007481_010 Hb_000046_500--Hb_007481_010 Hb_000477_100 Hb_000477_100 Hb_000046_500--Hb_000477_100 Hb_002989_020 Hb_002989_020 Hb_000046_500--Hb_002989_020 Hb_079526_040 Hb_079526_040 Hb_000046_500--Hb_079526_040 Hb_002071_070 Hb_002071_070 Hb_000046_500--Hb_002071_070 Hb_000260_350 Hb_000260_350 Hb_000349_260--Hb_000260_350 Hb_000637_110 Hb_000637_110 Hb_000349_260--Hb_000637_110 Hb_000088_170 Hb_000088_170 Hb_000349_260--Hb_000088_170 Hb_001511_060 Hb_001511_060 Hb_000349_260--Hb_001511_060 Hb_000392_420 Hb_000392_420 Hb_000349_260--Hb_000392_420 Hb_001473_160 Hb_001473_160 Hb_000349_260--Hb_001473_160 Hb_003777_200 Hb_003777_200 Hb_000317_040--Hb_003777_200 Hb_000317_040--Hb_000703_190 Hb_002326_040 Hb_002326_040 Hb_000317_040--Hb_002326_040 Hb_000317_040--Hb_000046_500 Hb_012506_030 Hb_012506_030 Hb_000317_040--Hb_012506_030 Hb_007975_060 Hb_007975_060 Hb_004754_050--Hb_007975_060 Hb_002157_120 Hb_002157_120 Hb_004754_050--Hb_002157_120 Hb_133702_010 Hb_133702_010 Hb_004754_050--Hb_133702_010 Hb_001087_030 Hb_001087_030 Hb_004754_050--Hb_001087_030 Hb_000058_130 Hb_000058_130 Hb_004754_050--Hb_000058_130 Hb_000260_460 Hb_000260_460 Hb_000703_190--Hb_000260_460 Hb_000078_140 Hb_000078_140 Hb_000703_190--Hb_000078_140 Hb_001817_170 Hb_001817_170 Hb_000703_190--Hb_001817_170 Hb_000139_080 Hb_000139_080 Hb_000703_190--Hb_000139_080 Hb_159809_070 Hb_159809_070 Hb_000703_190--Hb_159809_070 Hb_001269_330--Hb_007481_010 Hb_000256_150 Hb_000256_150 Hb_001269_330--Hb_000256_150 Hb_001269_330--Hb_001087_030 Hb_012498_010 Hb_012498_010 Hb_001269_330--Hb_012498_010 Hb_001269_330--Hb_000046_500
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.75244 4.62871 6.37595 9.06348 4.97858 4.27647
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.11555 4.52809 6.67987 4.64441 7.1326

CAGE analysis