Hb_019219_020

Information

Type -
Description -
Location Contig19219: 4105-12688
Sequence    

Annotation

kegg
ID fve:101300846
description profilin-like
nr
ID NP_001295719.1
description profilin-1 [Jatropha curcas]
swissprot
ID P0C0Y3
description Profilin OS=Fragaria ananassa PE=1 SV=1
trembl
ID D6BRE6
description Profilin OS=Jatropha curcas GN=JCGZ_07349 PE=2 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019219_020 0.0 - - profilin-1 [Jatropha curcas]
2 Hb_030565_080 0.2056673138 - - PREDICTED: Werner Syndrome-like exonuclease [Jatropha curcas]
3 Hb_027760_010 0.2195355253 - - PREDICTED: uncharacterized protein LOC105630460 [Jatropha curcas]
4 Hb_002338_060 0.2282647126 - - 2Fe-2S ferredoxin [Glycine soja]
5 Hb_004374_060 0.2292861603 - - hypothetical protein POPTR_0003s13140g [Populus trichocarpa]
6 Hb_019516_020 0.2302366847 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000173_100 0.2383414053 - - -
8 Hb_000098_190 0.2468157359 - - PREDICTED: uncharacterized protein LOC105633343 [Jatropha curcas]
9 Hb_000771_080 0.24751073 - - PREDICTED: cyclic nucleotide-gated ion channel 1-like [Jatropha curcas]
10 Hb_000720_160 0.2529970529 - - PREDICTED: C2 domain-containing protein At1g63220 [Jatropha curcas]
11 Hb_000265_240 0.2550441057 - - PREDICTED: uncharacterized protein LOC105643590 isoform X1 [Jatropha curcas]
12 Hb_000933_050 0.2607499822 - - protein binding protein, putative [Ricinus communis]
13 Hb_002447_130 0.2640691404 - - -
14 Hb_006634_040 0.2643644769 - - hypothetical protein VITISV_030841 [Vitis vinifera]
15 Hb_001810_030 0.2647585244 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
16 Hb_006816_220 0.2663161401 - - PREDICTED: zinc finger matrin-type protein 2 [Jatropha curcas]
17 Hb_000268_090 0.2680303952 - - PREDICTED: uncharacterized protein LOC105628378 isoform X2 [Jatropha curcas]
18 Hb_008078_030 0.2694584388 - - -
19 Hb_010368_020 0.2729754229 - - PREDICTED: uncharacterized protein LOC105630301 [Jatropha curcas]
20 Hb_004032_060 0.2753189921 - - elongation factor 1 gamma-like protein, partial [Ipomoea nil]

Gene co-expression network

sample Hb_019219_020 Hb_019219_020 Hb_030565_080 Hb_030565_080 Hb_019219_020--Hb_030565_080 Hb_027760_010 Hb_027760_010 Hb_019219_020--Hb_027760_010 Hb_002338_060 Hb_002338_060 Hb_019219_020--Hb_002338_060 Hb_004374_060 Hb_004374_060 Hb_019219_020--Hb_004374_060 Hb_019516_020 Hb_019516_020 Hb_019219_020--Hb_019516_020 Hb_000173_100 Hb_000173_100 Hb_019219_020--Hb_000173_100 Hb_000265_240 Hb_000265_240 Hb_030565_080--Hb_000265_240 Hb_000771_080 Hb_000771_080 Hb_030565_080--Hb_000771_080 Hb_001810_030 Hb_001810_030 Hb_030565_080--Hb_001810_030 Hb_000098_190 Hb_000098_190 Hb_030565_080--Hb_000098_190 Hb_097783_020 Hb_097783_020 Hb_030565_080--Hb_097783_020 Hb_003788_050 Hb_003788_050 Hb_030565_080--Hb_003788_050 Hb_028347_010 Hb_028347_010 Hb_027760_010--Hb_028347_010 Hb_000630_060 Hb_000630_060 Hb_027760_010--Hb_000630_060 Hb_002045_040 Hb_002045_040 Hb_027760_010--Hb_002045_040 Hb_000714_030 Hb_000714_030 Hb_027760_010--Hb_000714_030 Hb_000123_230 Hb_000123_230 Hb_027760_010--Hb_000123_230 Hb_027760_010--Hb_019516_020 Hb_002338_060--Hb_000265_240 Hb_000377_070 Hb_000377_070 Hb_002338_060--Hb_000377_070 Hb_007763_040 Hb_007763_040 Hb_002338_060--Hb_007763_040 Hb_002338_060--Hb_030565_080 Hb_001234_080 Hb_001234_080 Hb_002338_060--Hb_001234_080 Hb_129924_010 Hb_129924_010 Hb_002338_060--Hb_129924_010 Hb_004204_190 Hb_004204_190 Hb_004374_060--Hb_004204_190 Hb_015456_020 Hb_015456_020 Hb_004374_060--Hb_015456_020 Hb_000300_380 Hb_000300_380 Hb_004374_060--Hb_000300_380 Hb_004374_050 Hb_004374_050 Hb_004374_060--Hb_004374_050 Hb_004032_240 Hb_004032_240 Hb_004374_060--Hb_004032_240 Hb_010680_010 Hb_010680_010 Hb_004374_060--Hb_010680_010 Hb_029510_020 Hb_029510_020 Hb_019516_020--Hb_029510_020 Hb_019516_020--Hb_002045_040 Hb_001221_320 Hb_001221_320 Hb_019516_020--Hb_001221_320 Hb_000331_290 Hb_000331_290 Hb_019516_020--Hb_000331_290 Hb_002374_170 Hb_002374_170 Hb_019516_020--Hb_002374_170 Hb_000173_100--Hb_004374_060 Hb_003001_100 Hb_003001_100 Hb_000173_100--Hb_003001_100 Hb_004128_210 Hb_004128_210 Hb_000173_100--Hb_004128_210 Hb_000720_160 Hb_000720_160 Hb_000173_100--Hb_000720_160 Hb_002685_180 Hb_002685_180 Hb_000173_100--Hb_002685_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.86054 1.21181 2.23533 2.6145 14.5492 1.76471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.6431 9.62713 0.152761 0.836898 1.85756

CAGE analysis